Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JM956_RS07895 Genome accession   NZ_CP068719
Coordinates   1514108..1514710 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus cereus strain 21155     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1509108..1519710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM956_RS07875 dnaD 1509429..1510136 (+) 708 WP_000727172.1 DNA replication protein DnaD -
  JM956_RS07880 nth 1510152..1510799 (+) 648 WP_000933037.1 endonuclease III -
  JM956_RS07885 - 1510803..1511321 (+) 519 WP_000442647.1 YpoC family protein -
  JM956_RS07890 - 1511348..1514041 (-) 2694 WP_001283096.1 PBP1A family penicillin-binding protein -
  JM956_RS07895 recU 1514108..1514710 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  JM956_RS07900 - 1514814..1515839 (+) 1026 WP_000495647.1 DUF2515 domain-containing protein -
  JM956_RS32280 - 1515991..1516170 (-) 180 WP_001987054.1 hypothetical protein -
  JM956_RS07905 - 1516256..1516498 (+) 243 WP_001252036.1 hypothetical protein -
  JM956_RS07910 - 1516514..1516858 (+) 345 WP_000786940.1 YppE family protein -
  JM956_RS07915 - 1516885..1517076 (-) 192 WP_000242653.1 YppF family protein -
  JM956_RS07920 - 1517254..1517781 (+) 528 WP_000487630.1 YppG family protein -
  JM956_RS07925 - 1517938..1518369 (+) 432 WP_000546272.1 CotD family spore coat protein -
  JM956_RS07930 - 1518426..1518980 (+) 555 WP_000864832.1 DUF1273 domain-containing protein -
  JM956_RS07935 gpsB 1519078..1519413 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=530691 JM956_RS07895 WP_000155598.1 1514108..1514710(-) (recU) [Bacillus cereus strain 21155]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=530691 JM956_RS07895 WP_000155598.1 1514108..1514710(-) (recU) [Bacillus cereus strain 21155]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635