Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JM956_RS06215 Genome accession   NZ_CP068719
Coordinates   1201219..1203045 (+) Length   608 a.a.
NCBI ID   WP_000003359.1    Uniprot ID   A0A9W7QCU1
Organism   Bacillus cereus strain 21155     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196219..1208045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM956_RS06195 - 1196525..1197199 (-) 675 WP_000362616.1 TerC family protein -
  JM956_RS06200 mecA 1197545..1198228 (+) 684 WP_000350719.1 adaptor protein MecA Regulator
  JM956_RS06205 - 1198301..1199845 (+) 1545 WP_000799199.1 cardiolipin synthase -
  JM956_RS06210 - 1199925..1201167 (+) 1243 Protein_1138 competence protein CoiA family protein -
  JM956_RS06215 pepF 1201219..1203045 (+) 1827 WP_000003359.1 oligoendopeptidase F Regulator
  JM956_RS06220 - 1203177..1203350 (-) 174 WP_000750355.1 hypothetical protein -
  JM956_RS06225 - 1203580..1204473 (-) 894 WP_000360646.1 ClpXP adapter SpxH family protein -
  JM956_RS06230 - 1204473..1204871 (-) 399 WP_000043384.1 hypothetical protein -
  JM956_RS06235 - 1205040..1205618 (-) 579 WP_000191124.1 CYTH domain-containing protein -
  JM956_RS06240 - 1205763..1206134 (+) 372 WP_001180003.1 hypothetical protein -
  JM956_RS06245 - 1206165..1206803 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  JM956_RS06250 - 1206822..1207619 (+) 798 WP_000673181.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70219.51 Da        Isoelectric Point: 4.6462

>NTDB_id=530688 JM956_RS06215 WP_000003359.1 1201219..1203045(+) (pepF) [Bacillus cereus strain 21155]
MSEQNKAKTLPDRNEIEEASTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLETLQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSGTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDRRVREDAFKAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDLLLKSLNVLGDEYVGILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHTIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=530688 JM956_RS06215 WP_000003359.1 1201219..1203045(+) (pepF) [Bacillus cereus strain 21155]
ATGTCTGAACAAAACAAAGCGAAAACATTACCAGATCGCAATGAGATTGAAGAAGCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAGGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGATTCTGCGGACAATTTACTTGAGACATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTCTAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCAACAAATTTATA
TTCACAAGTATCTAGTGGCACAGCGTATATTGTGCCTGAAATTTTATCTATTTCAGAAGATACACTGCAAACATTCTTGA
AGGAAAATAGAGATTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCAGAAGCT
GAGGAAGCTTTATTAGCGGAAGCATCTGAAGTAATGAGTTCATCAAGCAATACATTCGGTATGTTGAATAACGCGGATTT
AAAATTCCCATCTATTAAAGGTGAAGACGGAGAAGAAATAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTTCGCGAAGATGCATTTAAAGCTGTATATGAAACGTACGGAAAATTTAAAAACACATTCGCAAGTACG
TTAAGTGGAGCAGTAAAACGTAATAATTTCAATGCGCGTGTTCGTAAATACGATTCTGCTCGCCAAGCTGCACTGAGCAA
TAATAATATTCCGGAAGCAGTATACGATCAACTCGTTGAAACGGTAAATGATAACTTACATTTATTACACCGTTACATCG
ATATTCGTAAGCGTGCATTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAATACGAAGAAGCGCAAGACCTTTTATTAAAATCTTTAAACGTACTTGGTGATGAATATGTTGGTATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGGGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCG
GTGCATAGTTACTATACAAGAAAGACACAACCGCACGTATATGGTGATTATTCCATCTTCGTAGCAGAAGTGGCATCTAC
TTGTAATGAAGCGCTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAACATACTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGCTAACGGAAATCTACTATGATTTAAATAAGAAATATTTCGGTGACGCTTTAGT
AATCGACGAAGAGATTGGTTTAGAATGGTCTCGTATTCCACACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACCGCTCTATCTAAACAGATTTTAGAAGAAGGACAACCAGCAGTAGAACGCTATATTAACGAGTTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTGTTGAAAAAAGCAGGAGTAGATATGGCATCTCCTGAACCAGTAAA
AGAGGCGCTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.533

0.487