Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JM956_RS00220 Genome accession   NZ_CP068719
Coordinates   40329..40613 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain 21155     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35329..45613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM956_RS00185 tmk 35521..36147 (+) 627 WP_000677219.1 dTMP kinase -
  JM956_RS00190 holB 36183..37166 (+) 984 WP_000169562.1 DNA polymerase III subunit delta' -
  JM956_RS00195 - 37172..37999 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  JM956_RS00200 yabA 38014..38364 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  JM956_RS00205 - 38447..39187 (+) 741 WP_001055352.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JM956_RS00210 - 39174..39464 (+) 291 WP_000414352.1 GIY-YIG nuclease family protein -
  JM956_RS00215 rsmI 39433..40308 (+) 876 WP_000267817.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JM956_RS00220 abrB 40329..40613 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JM956_RS00225 metG 41072..43081 (+) 2010 WP_080029558.1 methionine--tRNA ligase -
  JM956_RS00230 - 43248..44015 (+) 768 WP_000895851.1 TatD family hydrolase -
  JM956_RS00235 rnmV 44229..44786 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=530673 JM956_RS00220 WP_000843036.1 40329..40613(-) (abrB) [Bacillus cereus strain 21155]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=530673 JM956_RS00220 WP_000843036.1 40329..40613(-) (abrB) [Bacillus cereus strain 21155]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851