Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JM955_RS26420 Genome accession   NZ_CP068717
Coordinates   5185573..5186922 (-) Length   449 a.a.
NCBI ID   WP_063549059.1    Uniprot ID   -
Organism   Bacillus cereus strain CH     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5180573..5191922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM955_RS26385 - 5180630..5181325 (-) 696 WP_063549049.1 hypothetical protein -
  JM955_RS26390 - 5181312..5182100 (-) 789 WP_063549051.1 hypothetical protein -
  JM955_RS26395 - 5182133..5182702 (-) 570 WP_063549053.1 hypothetical protein -
  JM955_RS26400 - 5182806..5183279 (-) 474 WP_063549055.1 hypothetical protein -
  JM955_RS26405 hpf 5183681..5184223 (-) 543 WP_000671187.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JM955_RS26410 cspC 5184545..5184742 (-) 198 WP_001990088.1 cold shock protein CspC -
  JM955_RS26415 - 5184869..5185573 (-) 705 WP_080469895.1 ComF family protein -
  JM955_RS26420 comFA 5185573..5186922 (-) 1350 WP_063549059.1 ATP-dependent helicase ComFA Machinery gene
  JM955_RS26425 - 5187049..5188479 (-) 1431 WP_063549061.1 NlpC/P60 family protein -
  JM955_RS26430 - 5188628..5188942 (-) 315 WP_000400857.1 winged helix-turn-helix transcriptional regulator -
  JM955_RS26435 - 5189115..5189957 (-) 843 WP_000684725.1 DegV family protein -
  JM955_RS26440 - 5190194..5190829 (+) 636 WP_000926669.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51121.00 Da        Isoelectric Point: 9.9095

>NTDB_id=530665 JM955_RS26420 WP_063549059.1 5185573..5186922(-) (comFA) [Bacillus cereus strain CH]
MLAGKQLLLDELSSDLQRELNDLKRKGEVICVQGVKKKNSKYMCQRCGNVDQRLFASFLCRRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKKLNLLQWNGKLSTGQNLAAQGVVEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KERAARIYLTATPDETWKQKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIYKRIPRVLLQWLQTYLNKKHPIFL
FVPHVRYIEEISLLLKLLNKRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVSAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=530665 JM955_RS26420 WP_063549059.1 5185573..5186922(-) (comFA) [Bacillus cereus strain CH]
ATGCTGGCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAGGAAGGG
AGAGGTCATATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCAGCGGC
TATTTGCGTCGTTTTTATGTAGAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAAATTAAACTTGTTACAGTGGAACGGGAAGTT
GTCTACTGGTCAGAATTTGGCGGCACAAGGTGTTGTAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTGTTTCCGTATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTATTAGTCGTTGCGACCACTCATCAATTATTGCGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAGAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCAAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTTATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAACATCCTATTTTTTTA
TTTGTCCCCCATGTGCGATATATAGAAGAGATAAGCCTGTTGTTAAAATTATTAAACAAGCGAATTGAAGGTGTACATGC
AGAAGATCCGGGTAGAAAAGAAAAAGTAGCGGCTTTCAGAAAAGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AACGAGGCGTAACTGTGAAAAATTTGCAAGTAGCGGTTTTAGGGGCGGAAGAAGAAATATTCTCAGAAAGTGCACTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCGCCGTATGGAGAGGTCATTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGAGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(311-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.905

98.441

0.501
  comFA Latilactobacillus sakei subsp. sakei 23K

41.191

89.755

0.37