Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JM955_RS20505 Genome accession   NZ_CP068717
Coordinates   4093832..4094266 (-) Length   144 a.a.
NCBI ID   WP_063548531.1    Uniprot ID   -
Organism   Bacillus cereus strain CH     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4088832..4099266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM955_RS20490 - 4090011..4090568 (+) 558 WP_063548525.1 PadR family transcriptional regulator -
  JM955_RS20495 metE 4091080..4093368 (+) 2289 WP_063548527.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  JM955_RS20500 comJ 4093406..4093795 (-) 390 WP_063548529.1 competence protein ComJ -
  JM955_RS20505 nucA/comI 4093832..4094266 (-) 435 WP_063548531.1 DNA-entry nuclease Machinery gene
  JM955_RS20510 - 4094493..4095242 (+) 750 WP_063548533.1 DUF3967 domain-containing protein -
  JM955_RS20515 kinB 4095281..4096555 (-) 1275 WP_063548535.1 sporulation sensor histidine kinase KinB -
  JM955_RS20520 - 4096866..4097066 (+) 201 WP_000929276.1 hypothetical protein -
  JM955_RS20525 - 4097189..4098352 (+) 1164 WP_000434552.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15982.37 Da        Isoelectric Point: 8.9015

>NTDB_id=530651 JM955_RS20505 WP_063548531.1 4093832..4094266(-) (nucA/comI) [Bacillus cereus strain CH]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLGFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=530651 JM955_RS20505 WP_063548531.1 4093832..4094266(-) (nucA/comI) [Bacillus cereus strain CH]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGGATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCGTATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGGGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATATC
CAGATGGTACGCGTGTGAAGTTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549