Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JM955_RS12415 Genome accession   NZ_CP068717
Coordinates   2439558..2439836 (+) Length   92 a.a.
NCBI ID   WP_063547292.1    Uniprot ID   -
Organism   Bacillus cereus strain CH     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2434558..2444836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM955_RS12395 - 2435349..2435951 (+) 603 WP_063547290.1 hypothetical protein -
  JM955_RS12400 - 2436256..2437437 (+) 1182 WP_063547291.1 agmatine deiminase family protein -
  JM955_RS12405 - 2437911..2438162 (-) 252 WP_000827555.1 response regulator transcription factor -
  JM955_RS12410 - 2438539..2439417 (+) 879 WP_000397972.1 helix-turn-helix domain-containing protein -
  JM955_RS12415 abrB 2439558..2439836 (+) 279 WP_063547292.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JM955_RS12420 - 2440362..2441612 (+) 1251 WP_063547293.1 hypothetical protein -
  JM955_RS12425 - 2441680..2442438 (+) 759 WP_029442323.1 TSUP family transporter -
  JM955_RS12430 - 2442691..2443350 (+) 660 WP_063547294.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10406.33 Da        Isoelectric Point: 10.0092

>NTDB_id=530644 JM955_RS12415 WP_063547292.1 2439558..2439836(+) (abrB) [Bacillus cereus strain CH]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACVLTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=530644 JM955_RS12415 WP_063547292.1 2439558..2439836(+) (abrB) [Bacillus cereus strain CH]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCACCAAGAGCTT
GTGTACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489