Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JM955_RS00220 Genome accession   NZ_CP068717
Coordinates   40332..40616 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain CH     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35332..45616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM955_RS00185 tmk 35524..36150 (+) 627 WP_000677220.1 dTMP kinase -
  JM955_RS00190 holB 36186..37169 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  JM955_RS00195 - 37175..38002 (+) 828 WP_000272429.1 PSP1 domain-containing protein -
  JM955_RS00200 yabA 38017..38367 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  JM955_RS00205 - 38450..39190 (+) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JM955_RS00210 - 39177..39467 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  JM955_RS00215 rsmI 39436..40311 (+) 876 WP_063546183.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JM955_RS00220 abrB 40332..40616 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JM955_RS00225 metG 41104..43086 (+) 1983 WP_000134131.1 methionine--tRNA ligase -
  JM955_RS00230 - 43253..44020 (+) 768 WP_000895840.1 TatD family hydrolase -
  JM955_RS00235 rnmV 44236..44793 (+) 558 WP_000692837.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=530623 JM955_RS00220 WP_000843036.1 40332..40616(-) (abrB) [Bacillus cereus strain CH]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=530623 JM955_RS00220 WP_000843036.1 40332..40616(-) (abrB) [Bacillus cereus strain CH]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851