Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JMB28_RS04940 Genome accession   NZ_CP068712
Coordinates   1058808..1059524 (-) Length   238 a.a.
NCBI ID   WP_039069566.1    Uniprot ID   -
Organism   Staphylococcus shinii strain 14AME19     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1053808..1064524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMB28_RS04915 (JMB28_04915) - 1054314..1054538 (+) 225 WP_002482777.1 sulfurtransferase TusA family protein -
  JMB28_RS04925 (JMB28_04925) - 1055281..1056243 (+) 963 WP_069793024.1 LacI family DNA-binding transcriptional regulator -
  JMB28_RS04930 (JMB28_04930) - 1056328..1057812 (+) 1485 WP_069793023.1 sucrose-6-phosphate hydrolase -
  JMB28_RS04935 (JMB28_04935) - 1057809..1058774 (+) 966 WP_069793022.1 carbohydrate kinase -
  JMB28_RS04940 (JMB28_04940) agrA 1058808..1059524 (-) 717 WP_039069566.1 LytTR family DNA-binding domain-containing protein Regulator
  JMB28_RS04945 (JMB28_04945) - 1059537..1060457 (-) 921 WP_343236361.1 GHKL domain-containing protein -
  JMB28_RS04950 (JMB28_04950) - 1060859..1060996 (-) 138 WP_069793020.1 cyclic lactone autoinducer peptide -
  JMB28_RS04955 (JMB28_04955) - 1060999..1061568 (-) 570 WP_069793019.1 accessory gene regulator AgrB -
  JMB28_RS04960 (JMB28_04960) - 1062329..1063114 (-) 786 WP_069793018.1 carbon-nitrogen family hydrolase -
  JMB28_RS04965 (JMB28_04965) - 1063462..1064091 (-) 630 WP_069793017.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27953.79 Da        Isoelectric Point: 5.4095

>NTDB_id=530597 JMB28_RS04940 WP_039069566.1 1058808..1059524(-) (agrA) [Staphylococcus shinii strain 14AME19]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCIETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=530597 JMB28_RS04940 WP_039069566.1 1058808..1059524(-) (agrA) [Staphylococcus shinii strain 14AME19]
ATGAAAATATTCATTTGTGAAGACGACGAAAGACAACGTGAACATATGGTATCAATTATTAATAATTATATTATGATTGA
AGAAAAGCCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGATCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATATCCAATTAGAAGCTGATATCAATGGTATCAAGCTTGCAAGTGAAATACGCAAGCATGACCCG
GTTGGCAATATCATTTTTGTTACAAGTCACAGTGAGCTGACTTACTTAACATTTGTCTACAAGGTTGCTGCAATGGACTT
TATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCATAGAAACTTCTGAGTCACGTTTAAAACTAC
TCTCAAAAGAAAGCAGTGTTGAAACAATAGAATTAAAACGTGGTAGCAATTCTATTTATGTACAATACGACGATGTGATG
TTCTTTGAATCATCTAGCAAGTCCCATCGTTTAATTGCACATCTAGATAATCGTCAAATCGAATTCTATGGAAATCTTAA
AGAAATCGATCAGTTAGATAAACGTTTCTTTAGGTGTCATAATAGTTTCGTAGTTAATAGACACAATATCGAGTCCATCG
ACTCTAAATCGCGCATAGTCTATTTCAAAAACAATGAACATTGTTATGCGTCTGTAAGAAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849