Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JM964_RS09565 Genome accession   NZ_CP068708
Coordinates   1992453..1993820 (-) Length   455 a.a.
NCBI ID   WP_024404944.1    Uniprot ID   A0A4T2GZR1
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1973367..1994810 1992453..1993820 within 0


Gene organization within MGE regions


Location: 1973367..1994810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS09520 (JM964_09520) - 1973367..1974530 (+) 1164 WP_202847450.1 IS30 family transposase -
  JM964_RS09525 (JM964_09525) - 1974784..1976070 (-) 1287 WP_202847571.1 MFS transporter -
  JM964_RS09530 (JM964_09530) - 1976162..1976827 (-) 666 WP_044693935.1 hypothetical protein -
  JM964_RS09535 (JM964_09535) - 1976832..1977278 (-) 447 WP_024395765.1 LytTR family DNA-binding domain-containing protein -
  JM964_RS09545 (JM964_09545) - 1977418..1987938 (-) 10521 WP_330893112.1 DUF445 family protein -
  JM964_RS10410 - 1987957..1988643 (-) 687 WP_301183392.1 hypothetical protein -
  JM964_RS10440 - 1988656..1988736 (-) 81 Protein_1849 KxYKxGKxW signal peptide domain-containing protein -
  JM964_RS09550 (JM964_09550) - 1989303..1990523 (-) 1221 WP_024384168.1 glycosyltransferase -
  JM964_RS09555 (JM964_09555) - 1990870..1991628 (-) 759 WP_013730631.1 TIGR00266 family protein -
  JM964_RS09560 (JM964_09560) - 1991835..1992329 (-) 495 WP_202847572.1 beta-class carbonic anhydrase -
  JM964_RS09565 (JM964_09565) radA 1992453..1993820 (-) 1368 WP_024404944.1 DNA repair protein RadA Machinery gene
  JM964_RS09570 (JM964_09570) - 1993827..1994360 (-) 534 WP_044674700.1 histidine phosphatase family protein -
  JM964_RS09575 (JM964_09575) - 1994367..1994810 (-) 444 WP_002939955.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49871.38 Da        Isoelectric Point: 6.1911

>NTDB_id=530571 JM964_RS09565 WP_024404944.1 1992453..1993820(-) (radA) [Streptococcus suis strain ID33329]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=530571 JM964_RS09565 WP_024404944.1 1992453..1993820(-) (radA) [Streptococcus suis strain ID33329]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCCCGCACCAAGACTAACATGGAAGAGTTCAAC
CGTGTCCTCGGTGGCGGTGTGGTCCCAGGCAGTCTAGTCCTGATTGGAGGCGATCCAGGAATCGGGAAATCCACCCTGCT
TTTACAGGTATCTACCCAGCTTTCTACTATTGGCACGGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGC
TGCGGGCGGAGCGTCTGGGCGACATCGATAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTACAAGG
CTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GGCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCCTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTAGAAGAGCGTCTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCAGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGTGGTGTCAAACTGGATGAGCCAGCTATTGACCTTGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCGACCAACCCACAAGAGTGCTTTATAGGCGAAATTGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCTCTGACCGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4T2GZR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624