Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   K8P00_RS05365 Genome accession   NZ_CP082861
Coordinates   1054342..1056324 (-) Length   660 a.a.
NCBI ID   WP_003822862.1    Uniprot ID   -
Organism   Eikenella corrodens strain FDAARGOS_1474     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049342..1061324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P00_RS05355 (K8P00_05315) - 1050149..1051552 (+) 1404 WP_003822867.1 chloride channel protein -
  K8P00_RS05360 (K8P00_05320) - 1051896..1053920 (-) 2025 WP_003822866.1 OPT family oligopeptide transporter -
  K8P00_RS05365 (K8P00_05325) recP/tkt 1054342..1056324 (-) 1983 WP_003822862.1 transketolase Machinery gene
  K8P00_RS05370 (K8P00_05330) - 1056384..1056785 (-) 402 WP_003822861.1 hypothetical protein -
  K8P00_RS05375 (K8P00_05335) tmk 1056876..1057493 (-) 618 WP_003822859.1 dTMP kinase -
  K8P00_RS05380 (K8P00_05340) - 1057568..1057879 (-) 312 WP_003822858.1 hypothetical protein -
  K8P00_RS05385 (K8P00_05345) - 1057956..1058558 (-) 603 WP_003822857.1 inner membrane-spanning protein YciB -
  K8P00_RS05390 (K8P00_05350) mltG 1058560..1059555 (-) 996 WP_003822856.1 endolytic transglycosylase MltG -
  K8P00_RS05395 (K8P00_05355) - 1059705..1061012 (-) 1308 WP_003822855.1 MFS transporter -
  K8P00_RS05400 (K8P00_05360) ccoS 1061009..1061188 (-) 180 WP_003822854.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72062.62 Da        Isoelectric Point: 5.5809

>NTDB_id=530554 K8P00_RS05365 WP_003822862.1 1054342..1056324(-) (recP/tkt) [Eikenella corrodens strain FDAARGOS_1474]
MPSQLANAIRFLSADAIQKANSGHPGAPMGMAEMAEVLWTKFLRHNPANPKFYNRDRFILSNGHASMLLYSLLHLTGYNL
SIEDLKNFRQLHSKTPGHPEYGYTDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMGDGCLMEGV
SHEACSLAGTLGLGKLIVLYDDNNISIDGKVDGWFTENIPQRFESYGWHVVPNVNGHDTAAIEAAIEAARTETGKPSIIC
CKTLIGKGSANKEGSHKIHGAPLGTDEIEATRKHLGWTYPAFEIPQEIYAAWSAKEQGAKLEAEWNELFAQYQAKYPAEA
AEFVRRMEHRLPENFDAYIQTALQEVCAKAETIATRKASQNSIEILAKELPELVGGSADLTPSNLTDWSNSVSVTREKGG
NYIHYGVREFGMGAIMNGLALHGGVKPFGATFLMFSEYQRNALRMAALMKINPVFVFTHDSIGLGEDGPTHQPIEQTATL
RLIPNMDVWRPCDTAESLVAWAEAAKAEDHPSCLIFSRQNLKFQARNEQQLNDIKRGGYVISEAQGNAQAVIIATGSEVE
LALEAQKALAAQNIAVRVVSMPSTNVFDRQDTAYKAAVLPEGLPRIAVEAGHADGWYKYIGLNGAVVGINRFGESAPAEL
LFKEFGFTVENVVDTVKSVL

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=530554 K8P00_RS05365 WP_003822862.1 1054342..1056324(-) (recP/tkt) [Eikenella corrodens strain FDAARGOS_1474]
ATGCCCTCCCAACTTGCCAACGCCATCCGCTTCCTCTCTGCCGACGCCATCCAAAAAGCCAACTCCGGTCACCCCGGCGC
GCCGATGGGCATGGCGGAAATGGCGGAAGTATTGTGGACGAAATTCCTGCGCCACAATCCCGCCAACCCCAAATTCTACA
ACCGCGACCGCTTCATCCTCTCCAACGGCCACGCGTCCATGCTGTTGTACAGCCTGCTGCACCTGACCGGCTACAACCTG
AGCATTGAAGACCTGAAAAACTTCCGCCAACTGCACAGCAAAACCCCCGGTCACCCCGAATACGGCTACACCGACGGCGT
GGAAACCACGACCGGCCCGTTGGGACAAGGCATTGCCAACGCGGTGGGCATGGCATTGGCGGAAAAAATCCTGGCCGCCG
AATTTAATAAAGACGGTTTGAACATCGTCGATCATTACACCTACGTCTTCATGGGCGACGGCTGCCTGATGGAAGGCGTA
TCGCACGAAGCCTGCTCACTAGCCGGCACTTTGGGCTTGGGCAAACTGATTGTTTTGTATGATGACAACAATATTTCCAT
CGACGGCAAAGTGGACGGCTGGTTTACCGAAAACATCCCGCAACGCTTTGAAAGCTACGGCTGGCACGTCGTTCCTAACG
TAAACGGCCACGACACCGCCGCTATCGAAGCCGCTATCGAAGCCGCCCGCACCGAAACCGGCAAACCGTCCATCATCTGC
TGCAAAACCTTAATCGGCAAAGGCAGCGCCAACAAAGAAGGCAGCCACAAAATCCACGGCGCACCTTTGGGCACGGACGA
AATCGAAGCCACGCGCAAACATCTGGGCTGGACTTACCCCGCCTTTGAAATCCCGCAAGAAATCTACGCCGCATGGAGCG
CGAAAGAACAAGGCGCGAAACTGGAAGCGGAATGGAACGAACTGTTCGCGCAATACCAAGCAAAATATCCCGCCGAAGCC
GCAGAATTCGTGCGCCGCATGGAACACAGGCTACCTGAAAACTTCGACGCCTATATTCAGACGGCCTTGCAAGAAGTGTG
CGCCAAAGCCGAAACCATCGCCACCCGCAAAGCCAGCCAAAACAGCATCGAAATCCTCGCTAAAGAGTTGCCCGAACTGG
TGGGCGGTTCTGCCGACCTGACCCCGTCCAACCTGACCGACTGGTCAAACAGCGTCTCCGTTACCCGCGAAAAAGGCGGC
AACTACATCCACTACGGCGTACGCGAGTTCGGCATGGGTGCCATCATGAACGGCCTTGCCCTGCACGGCGGCGTGAAACC
CTTCGGCGCGACTTTCCTAATGTTCAGCGAATACCAGCGCAATGCTCTGCGCATGGCGGCGCTGATGAAAATTAACCCCG
TCTTCGTCTTCACCCACGATTCCATCGGCCTCGGCGAAGACGGTCCGACCCACCAACCCATCGAGCAAACCGCCACCCTG
CGCCTGATTCCGAATATGGACGTATGGCGTCCGTGCGACACCGCCGAATCGCTGGTGGCATGGGCGGAAGCGGCAAAAGC
CGAAGACCATCCGTCCTGCCTGATTTTCAGCCGTCAAAACCTGAAATTCCAAGCGCGCAACGAACAACAACTGAACGACA
TCAAACGCGGCGGCTACGTCATTAGCGAAGCCCAAGGCAACGCCCAAGCCGTCATCATTGCCACCGGTTCCGAAGTCGAG
CTGGCTTTGGAAGCACAAAAAGCCCTCGCCGCACAAAACATCGCCGTACGCGTCGTTTCCATGCCGTCCACCAACGTCTT
CGACCGCCAAGACACCGCCTATAAAGCCGCCGTCCTGCCCGAAGGCCTGCCGCGCATCGCCGTAGAAGCCGGACACGCAG
ACGGCTGGTACAAATACATCGGCCTGAACGGCGCAGTCGTCGGCATCAACCGCTTCGGCGAATCCGCCCCTGCCGAACTG
CTGTTCAAAGAATTCGGCTTTACCGTGGAAAATGTGGTTGATACGGTGAAATCAGTGTTGTAG

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(547-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.028

100

0.497