Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   JM964_RS00745 Genome accession   NZ_CP068708
Coordinates   119886..120839 (+) Length   317 a.a.
NCBI ID   WP_044776365.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114886..125839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS00705 (JM964_00705) - 115149..116099 (-) 951 WP_014637311.1 S66 peptidase family protein -
  JM964_RS00710 (JM964_00710) comYA 116185..117135 (+) 951 WP_105140681.1 competence type IV pilus ATPase ComGA Machinery gene
  JM964_RS00715 (JM964_00715) comYB 117047..118084 (+) 1038 WP_238492613.1 competence type IV pilus assembly protein ComGB Machinery gene
  JM964_RS00720 (JM964_00720) comYC 118086..118367 (+) 282 WP_024395447.1 competence type IV pilus major pilin ComGC Machinery gene
  JM964_RS00725 (JM964_00725) comGD 118348..118755 (+) 408 WP_024395446.1 competence type IV pilus minor pilin ComGD -
  JM964_RS00730 (JM964_00730) comYE 118727..119020 (+) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  JM964_RS00735 (JM964_00735) comGF/cglF 119007..119441 (+) 435 WP_024395445.1 competence type IV pilus minor pilin ComGF Machinery gene
  JM964_RS00740 (JM964_00740) comGG 119419..119829 (+) 411 WP_024395444.1 competence type IV pilus minor pilin ComGG -
  JM964_RS00745 (JM964_00745) comYH 119886..120839 (+) 954 WP_044776365.1 class I SAM-dependent methyltransferase Machinery gene
  JM964_RS00750 (JM964_00750) - 120889..122076 (+) 1188 WP_014637319.1 acetate kinase -
  JM964_RS00755 (JM964_00755) - 122337..122888 (+) 552 WP_014637320.1 folate family ECF transporter S component -
  JM964_RS00760 (JM964_00760) - 122944..124200 (+) 1257 WP_024401511.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  JM964_RS00765 (JM964_00765) pepA 124245..125306 (-) 1062 WP_024409100.1 glutamyl aminopeptidase -
  JM964_RS00770 (JM964_00770) - 125453..125737 (+) 285 WP_044769538.1 DUF4651 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35688.73 Da        Isoelectric Point: 4.4003

>NTDB_id=530537 JM964_RS00745 WP_044776365.1 119886..120839(+) (comYH) [Streptococcus suis strain ID33329]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=530537 JM964_RS00745 WP_044776365.1 119886..120839(+) (comYH) [Streptococcus suis strain ID33329]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGGTCAGCATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCTATCGGCTTTATCCTATCTTTCCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTTA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGTTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

60.443

99.685

0.603
  comYH Streptococcus mutans UA159

60.127

99.685

0.599