Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JK375_RS13545 Genome accession   NZ_CP068706
Coordinates   2764465..2765094 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain J53-p1-pV-hybrid-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2759465..2770094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK375_RS13530 (JK375_13530) helD 2759707..2761761 (-) 2055 WP_001295354.1 DNA helicase IV -
  JK375_RS13535 (JK375_13535) yccF 2761884..2762330 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JK375_RS13540 (JK375_13540) yccS 2762340..2764502 (+) 2163 WP_000875061.1 YccS family putative transporter -
  JK375_RS13545 (JK375_13545) sxy/tfoX 2764465..2765094 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JK375_RS13550 (JK375_13550) sulA 2765313..2765822 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JK375_RS13555 (JK375_13555) ompA 2766179..2767219 (+) 1041 WP_000750416.1 porin OmpA -
  JK375_RS13560 (JK375_13560) matP 2767295..2767747 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JK375_RS13565 (JK375_13565) ycbZ 2767933..2769693 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=530518 JK375_RS13545 WP_000839153.1 2764465..2765094(-) (sxy/tfoX) [Escherichia coli strain J53-p1-pV-hybrid-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=530518 JK375_RS13545 WP_000839153.1 2764465..2765094(-) (sxy/tfoX) [Escherichia coli strain J53-p1-pV-hybrid-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1