Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   JKV45_RS01475 Genome accession   NZ_CP068678
Coordinates   288376..288933 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NCCP15783     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 283376..293933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV45_RS01455 (JKV45_01455) pilR 284652..285989 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  JKV45_RS01460 (JKV45_01460) thiO 286035..287129 (-) 1095 WP_009316267.1 glycine oxidase ThiO -
  JKV45_RS01465 (JKV45_01465) - 287264..287773 (+) 510 WP_003110424.1 Tfp pilus assembly protein FimT/FimU -
  JKV45_RS01470 (JKV45_01470) - 287879..288385 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  JKV45_RS01475 (JKV45_01475) pilV 288376..288933 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  JKV45_RS01480 (JKV45_01480) pilW 288930..289754 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  JKV45_RS01485 (JKV45_01485) pilX 289751..290338 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  JKV45_RS01490 (JKV45_01490) pilY1 290350..293835 (+) 3486 WP_003110421.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=530291 JKV45_RS01475 WP_003110422.1 288376..288933(+) (pilV) [Pseudomonas aeruginosa strain NCCP15783]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=530291 JKV45_RS01475 WP_003110422.1 288376..288933(+) (pilV) [Pseudomonas aeruginosa strain NCCP15783]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGTATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984