Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   JHS88_RS16885 Genome accession   NZ_CP068648
Coordinates   255283..256380 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain TJ-187     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 250283..261380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS88_RS16855 (JHS88_16835) - 250419..251396 (+) 978 WP_025558320.1 Gfo/Idh/MocA family protein -
  JHS88_RS16860 (JHS88_16840) - 251470..252807 (-) 1338 WP_025521024.1 MATE family efflux transporter -
  JHS88_RS16865 (JHS88_16845) - 252930..253244 (-) 315 WP_005453573.1 DUF496 family protein -
  JHS88_RS16870 (JHS88_16850) - 253572..253787 (+) 216 WP_005477197.1 hypothetical protein -
  JHS88_RS16875 (JHS88_16855) - 253964..254614 (+) 651 WP_017447360.1 YceH family protein -
  JHS88_RS16880 (JHS88_16860) - 254611..254931 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  JHS88_RS16885 (JHS88_16865) luxP 255283..256380 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  JHS88_RS16890 (JHS88_16870) luxQ 256380..258956 (+) 2577 WP_140093567.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  JHS88_RS16895 (JHS88_16875) - 259168..259623 (+) 456 WP_162457515.1 MarR family transcriptional regulator -
  JHS88_RS16900 (JHS88_16880) - 259661..260716 (+) 1056 WP_025623626.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=530234 JHS88_RS16885 WP_005463467.1 255283..256380(+) (luxP) [Vibrio parahaemolyticus strain TJ-187]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=530234 JHS88_RS16885 WP_005463467.1 255283..256380(+) (luxP) [Vibrio parahaemolyticus strain TJ-187]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCTTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGAGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCATCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATCAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATTAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644