Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   JHS88_RS13805 Genome accession   NZ_CP068647
Coordinates   2957474..2958052 (-) Length   192 a.a.
NCBI ID   WP_140391938.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJ-187     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2952474..2963052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS88_RS13780 (JHS88_13765) aroB 2952764..2953864 (-) 1101 WP_025546399.1 3-dehydroquinate synthase -
  JHS88_RS13785 (JHS88_13770) aroK 2953896..2954414 (-) 519 WP_005381319.1 shikimate kinase AroK -
  JHS88_RS13790 (JHS88_13775) pilQ 2954603..2956351 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  JHS88_RS13795 (JHS88_13780) pilP 2956383..2956898 (-) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  JHS88_RS13800 (JHS88_13785) pilO 2956888..2957481 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  JHS88_RS13805 (JHS88_13790) pilN 2957474..2958052 (-) 579 WP_140391938.1 PilN domain-containing protein Machinery gene
  JHS88_RS13810 (JHS88_13795) pilM 2958036..2959052 (-) 1017 WP_031778293.1 type IV pilus biogenesis protein PilM Machinery gene
  JHS88_RS13815 (JHS88_13800) - 2959195..2961765 (+) 2571 WP_140222517.1 penicillin-binding protein 1A -
  JHS88_RS13820 (JHS88_13805) oxyR 2961821..2962729 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.91 Da        Isoelectric Point: 6.6554

>NTDB_id=530226 JHS88_RS13805 WP_140391938.1 2957474..2958052(-) (pilN) [Vibrio parahaemolyticus strain TJ-187]
MLYRINILPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=530226 JHS88_RS13805 WP_140391938.1 2957474..2958052(-) (pilN) [Vibrio parahaemolyticus strain TJ-187]
GTGCTTTATCGCATTAACATATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTTATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.812

100

0.828
  pilN Vibrio cholerae strain A1552

62.431

94.271

0.589