Detailed information NTG0530217

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JHS88_RS12705
• Genome accession: NZ_CP068647
• Coordinates: 2736463..2737452 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain TJ-187
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2731463..2742452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS88_RS12690 (JHS88_12675)	recA	2732012..2733055 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
JHS88_RS12695 (JHS88_12680)	pncC	2733255..2733737 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
JHS88_RS12700 (JHS88_12685)	mutS	2733822..2736383 (+)	2562	WP_025546664.1	DNA mismatch repair protein MutS	-
JHS88_RS12705 (JHS88_12690)	rpoS	2736463..2737452 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
JHS88_RS12710 (JHS88_12695)	-	2737533..2738456 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
JHS88_RS12715 (JHS88_12700)	-	2738471..2739097 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JHS88_RS12720 (JHS88_12705)	surE	2739097..2739873 (-)	777	WP_025575295.1	5'/3'-nucleotidase SurE	-
JHS88_RS12725 (JHS88_12710)	truD	2739873..2740916 (-)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
JHS88_RS12730 (JHS88_12715)	ispF	2740963..2741439 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JHS88_RS12735 (JHS88_12720)	ispD	2741457..2742161 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JHS88_RS12740 (JHS88_12725)	ftsB	2742163..2742444 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=530217 JHS88_RS12705 WP_005478537.1 2736463..2737452(-) (rpoS) [Vibrio parahaemolyticus strain TJ-187]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=530217 JHS88_RS12705 WP_005478537.1 2736463..2737452(-) (rpoS) [Vibrio parahaemolyticus strain TJ-187]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAC
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851