Detailed information NTG0530195

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: JHS88_RS01205
• Genome accession: NZ_CP068647
• Coordinates: 256998..258005 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain TJ-187
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 251998..263005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS88_RS01175 (JHS88_01185)	zapB	252167..252409 (+)	243	WP_005481417.1	cell division protein ZapB	-
JHS88_RS01180 (JHS88_01190)	rraA	252514..253026 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
JHS88_RS01185 (JHS88_01195)	-	253103..254020 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
JHS88_RS01190 (JHS88_01200)	hslU	254205..255536 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
JHS88_RS01195 (JHS88_01205)	hslV	255560..256111 (-)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
JHS88_RS01200 (JHS88_01210)	ftsN	256276..256821 (-)	546	WP_005481405.1	cell division protein FtsN	-
JHS88_RS01205 (JHS88_01215)	cytR	256998..258005 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
JHS88_RS01210 (JHS88_01220)	priA	258338..260542 (-)	2205	WP_140391433.1	primosomal protein N'	-
JHS88_RS01215 (JHS88_01225)	rpmE	260837..261058 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
JHS88_RS01220 (JHS88_01230)	rpsJ	261516..261827 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
JHS88_RS01225 (JHS88_01235)	rplC	261842..262471 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=530195 JHS88_RS01205 WP_005481416.1 256998..258005(-) (cytR) [Vibrio parahaemolyticus strain TJ-187]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=530195 JHS88_RS01205 WP_005481416.1 256998..258005(-) (cytR) [Vibrio parahaemolyticus strain TJ-187]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCGCAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCATTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904