Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   JHS79_RS22300 Genome accession   NZ_CP068642
Coordinates   1042323..1043504 (+) Length   393 a.a.
NCBI ID   WP_005481314.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1037323..1048504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS22280 (JHS79_22105) - 1038689..1039687 (+) 999 WP_140126184.1 LysR family transcriptional regulator -
  JHS79_RS22285 (JHS79_22110) - 1039856..1040464 (+) 609 WP_237301371.1 LysR family transcriptional regulator -
  JHS79_RS22290 (JHS79_22115) - 1040451..1040734 (+) 284 Protein_944 JAB domain-containing protein -
  JHS79_RS22295 (JHS79_22120) ylqF 1041024..1041968 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  JHS79_RS22300 (JHS79_22125) cqsA 1042323..1043504 (+) 1182 WP_005481314.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  JHS79_RS22305 (JHS79_22130) cqsS 1043582..1045630 (-) 2049 WP_025540552.1 response regulator Regulator
  JHS79_RS22310 (JHS79_22135) - 1045950..1046252 (+) 303 Protein_948 HAD family phosphatase -
  JHS79_RS22315 (JHS79_22140) - 1046515..1047555 (+) 1041 Protein_949 IS481 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43838.17 Da        Isoelectric Point: 6.4984

>NTDB_id=530191 JHS79_RS22300 WP_005481314.1 1042323..1043504(+) (cqsA) [Vibrio parahaemolyticus strain VP157]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPEGSGLLQKLGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=530191 JHS79_RS22300 WP_005481314.1 1042323..1043504(+) (cqsA) [Vibrio parahaemolyticus strain VP157]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCGGCCTTTGAGCACCAACTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATACAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAGAGGGGTCTGGATTATTACAAAAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTCTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.398

98.473

0.575