Detailed information NTG0530171

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JHS79_RS14625
• Genome accession: NZ_CP068641
• Coordinates: 2937013..2938002 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain VP157
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2932013..2943002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS79_RS14610 (JHS79_14445)	recA	2932562..2933605 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
JHS79_RS14615 (JHS79_14450)	pncC	2933806..2934288 (-)	483	WP_025554256.1	nicotinamide-nucleotide amidase	-
JHS79_RS14620 (JHS79_14455)	mutS	2934373..2936934 (+)	2562	WP_140126381.1	DNA mismatch repair protein MutS	-
JHS79_RS14625 (JHS79_14460)	rpoS	2937013..2938002 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
JHS79_RS14630 (JHS79_14465)	-	2938083..2939006 (-)	924	WP_140126382.1	peptidoglycan DD-metalloendopeptidase family protein	-
JHS79_RS14635 (JHS79_14470)	-	2939021..2939647 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JHS79_RS14640 (JHS79_14475)	surE	2939647..2940423 (-)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
JHS79_RS14645 (JHS79_14480)	truD	2940423..2941466 (-)	1044	WP_140126383.1	tRNA pseudouridine(13) synthase TruD	-
JHS79_RS14650 (JHS79_14485)	ispF	2941513..2941989 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JHS79_RS14655 (JHS79_14490)	ispD	2942007..2942711 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JHS79_RS14660 (JHS79_14495)	ftsB	2942713..2942994 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=530171 JHS79_RS14625 WP_005478537.1 2937013..2938002(-) (rpoS) [Vibrio parahaemolyticus strain VP157]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=530171 JHS79_RS14625 WP_005478537.1 2937013..2938002(-) (rpoS) [Vibrio parahaemolyticus strain VP157]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACTCTTGAAGAAGTGGGGCGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851