Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JHS79_RS14495 Genome accession   NZ_CP068641
Coordinates   2914898..2915416 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain VP157     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2909898..2920416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS14470 (JHS79_14305) rimM 2910006..2910554 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  JHS79_RS14475 (JHS79_14310) rpsP 2910583..2910831 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  JHS79_RS14480 (JHS79_14315) ffh 2911041..2912423 (-) 1383 WP_005462555.1 signal recognition particle protein -
  JHS79_RS14485 (JHS79_14320) - 2912636..2913430 (+) 795 WP_005462565.1 cytochrome C assembly family protein -
  JHS79_RS14490 (JHS79_14325) - 2913556..2914836 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  JHS79_RS14495 (JHS79_14330) luxS 2914898..2915416 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  JHS79_RS14500 (JHS79_14335) - 2915483..2916088 (-) 606 WP_015297256.1 hypothetical protein -
  JHS79_RS14505 (JHS79_14340) gshA 2916113..2917681 (-) 1569 WP_140126225.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=530168 JHS79_RS14495 WP_005462534.1 2914898..2915416(-) (luxS) [Vibrio parahaemolyticus strain VP157]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=530168 JHS79_RS14495 WP_005462534.1 2914898..2915416(-) (luxS) [Vibrio parahaemolyticus strain VP157]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884