Detailed information NTG0530149

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: JHS79_RS01320
• Genome accession: NZ_CP068641
• Coordinates: 285107..286114 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain VP157
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 280107..291114

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS79_RS01290 (JHS79_01295)	zapB	280278..280520 (+)	243	WP_005481417.1	cell division protein ZapB	-
JHS79_RS01295 (JHS79_01300)	rraA	280625..281137 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
JHS79_RS01300 (JHS79_01305)	-	281214..282131 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
JHS79_RS01305 (JHS79_01310)	hslU	282316..283647 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
JHS79_RS01310 (JHS79_01315)	hslV	283671..284222 (-)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
JHS79_RS01315 (JHS79_01320)	ftsN	284386..284931 (-)	546	WP_005481405.1	cell division protein FtsN	-
JHS79_RS01320 (JHS79_01325)	cytR	285107..286114 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
JHS79_RS01325 (JHS79_01330)	priA	286447..288651 (-)	2205	WP_140096898.1	primosomal protein N'	-
JHS79_RS01330 (JHS79_01335)	rpmE	288946..289167 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
JHS79_RS01335 (JHS79_01340)	rpsJ	289625..289936 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
JHS79_RS01340 (JHS79_01345)	rplC	289951..290580 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=530149 JHS79_RS01320 WP_005481416.1 285107..286114(-) (cytR) [Vibrio parahaemolyticus strain VP157]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=530149 JHS79_RS01320 WP_005481416.1 285107..286114(-) (cytR) [Vibrio parahaemolyticus strain VP157]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCCATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTGTTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCGCAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTGAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904