Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JHT21_RS06150 Genome accession   NZ_CP068638
Coordinates   1331286..1332707 (-) Length   473 a.a.
NCBI ID   WP_025605651.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP120     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1326286..1337707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT21_RS06125 (JHT21_06120) - 1326851..1327501 (+) 651 WP_029804699.1 thiopurine S-methyltransferase -
  JHT21_RS06130 (JHT21_06125) purT 1327603..1328778 (-) 1176 WP_029804700.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  JHT21_RS06135 (JHT21_06130) cdd 1328926..1329813 (-) 888 WP_021822781.1 cytidine deaminase -
  JHT21_RS06140 (JHT21_06135) - 1330177..1330854 (-) 678 WP_005454891.1 LrgB family protein -
  JHT21_RS06145 (JHT21_06140) - 1330856..1331230 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  JHT21_RS06150 (JHT21_06145) sbcB 1331286..1332707 (-) 1422 WP_025605651.1 exodeoxyribonuclease I Machinery gene
  JHT21_RS06155 (JHT21_06150) - 1332863..1334236 (-) 1374 WP_024701129.1 L-cystine transporter -
  JHT21_RS06160 (JHT21_06155) - 1334429..1335124 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  JHT21_RS06165 (JHT21_06160) cobT 1335809..1336852 (+) 1044 WP_029804701.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  JHT21_RS06170 (JHT21_06165) - 1336897..1337649 (+) 753 WP_031822847.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54631.95 Da        Isoelectric Point: 4.9813

>NTDB_id=530114 JHT21_RS06150 WP_025605651.1 1331286..1332707(-) (sbcB) [Vibrio parahaemolyticus strain VP120]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=530114 JHT21_RS06150 WP_025605651.1 1331286..1332707(-) (sbcB) [Vibrio parahaemolyticus strain VP120]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGATCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTGTCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797