Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K8B73_RS09140 Genome accession   NZ_CP082827
Coordinates   1951859..1953286 (-) Length   475 a.a.
NCBI ID   WP_000980626.1    Uniprot ID   -
Organism   Escherichia coli strain SCAID WND2-2021 (3/145)     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1946859..1958286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B73_RS09115 (K8B73_09115) hisL 1947883..1947933 (-) 51 WP_001364200.1 his operon leader peptide -
  K8B73_RS09120 (K8B73_09120) yeeZ 1948360..1949184 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  K8B73_RS09125 (K8B73_09125) yeeY 1949230..1950159 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  K8B73_RS09130 (K8B73_09130) yoeI 1950374..1950436 (+) 63 WP_010723108.1 membrane protein YoeI -
  K8B73_RS09135 (K8B73_09135) plaP 1950426..1951784 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K8B73_RS09140 (K8B73_09140) sbcB 1951859..1953286 (-) 1428 WP_000980626.1 exodeoxyribonuclease I Machinery gene
  K8B73_RS09145 (K8B73_09145) dacD 1953495..1954661 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K8B73_RS09150 (K8B73_09150) sbmC 1954780..1955253 (+) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  K8B73_RS09155 (K8B73_09155) yeeA 1955452..1956510 (+) 1059 WP_001200877.1 FUSC family protein -
  K8B73_RS09160 (K8B73_09160) tmaR 1956682..1957011 (+) 330 WP_000450409.1 DUF496 family protein -
  K8B73_RS09165 (K8B73_09165) - 1957112..1957555 (-) 444 WP_001189433.1 EutP/PduV family microcompartment system protein -
  K8B73_RS09170 (K8B73_09170) pduU 1957560..1957910 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54532.81 Da        Isoelectric Point: 5.4700

>NTDB_id=530106 K8B73_RS09140 WP_000980626.1 1951859..1953286(-) (sbcB) [Escherichia coli strain SCAID WND2-2021 (3/145)]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=530106 K8B73_RS09140 WP_000980626.1 1951859..1953286(-) (sbcB) [Escherichia coli strain SCAID WND2-2021 (3/145)]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTTCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCT
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGACGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583