Detailed information NTG0530085

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JHT10_RS20765
• Genome accession: NZ_CP068631
• Coordinates: 2664473..2665462 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain TJ-20
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2659473..2670462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHT10_RS20750 (JHT10_20710)	recA	2660022..2661065 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
JHT10_RS20755 (JHT10_20715)	pncC	2661266..2661748 (-)	483	WP_025795578.1	nicotinamide-nucleotide amidase	-
JHT10_RS20760 (JHT10_20720)	mutS	2661833..2664394 (+)	2562	WP_029804975.1	DNA mismatch repair protein MutS	-
JHT10_RS20765 (JHT10_20725)	rpoS	2664473..2665462 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
JHT10_RS20770 (JHT10_20730)	-	2665553..2666476 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
JHT10_RS20775 (JHT10_20735)	-	2666491..2667117 (-)	627	WP_029804973.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JHT10_RS20780 (JHT10_20740)	surE	2667117..2667893 (-)	777	WP_029804971.1	5'/3'-nucleotidase SurE	-
JHT10_RS20785 (JHT10_20745)	truD	2667893..2668936 (-)	1044	WP_029804969.1	tRNA pseudouridine(13) synthase TruD	-
JHT10_RS20790 (JHT10_20750)	ispF	2668983..2669459 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JHT10_RS20795 (JHT10_20755)	ispD	2669477..2670181 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=530085 JHT10_RS20765 WP_005478537.1 2664473..2665462(-) (rpoS) [Vibrio parahaemolyticus strain TJ-20]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=530085 JHT10_RS20765 WP_005478537.1 2664473..2665462(-) (rpoS) [Vibrio parahaemolyticus strain TJ-20]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGTCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851