Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JHT10_RS20645 Genome accession   NZ_CP068631
Coordinates   2642642..2643160 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain TJ-20     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2637642..2648160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT10_RS20620 (JHT10_20580) rimM 2637751..2638299 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  JHT10_RS20625 (JHT10_20585) rpsP 2638328..2638576 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  JHT10_RS20630 (JHT10_20590) ffh 2638786..2640168 (-) 1383 WP_005462555.1 signal recognition particle protein -
  JHT10_RS20635 (JHT10_20595) - 2640381..2641175 (+) 795 WP_005462565.1 cytochrome C assembly family protein -
  JHT10_RS20640 (JHT10_20600) - 2641301..2642581 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  JHT10_RS20645 (JHT10_20605) luxS 2642642..2643160 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  JHT10_RS20650 (JHT10_20610) - 2643227..2643832 (-) 606 WP_015297256.1 hypothetical protein -
  JHT10_RS20655 (JHT10_20615) gshA 2643857..2645425 (-) 1569 WP_029806072.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=530082 JHT10_RS20645 WP_005462534.1 2642642..2643160(-) (luxS) [Vibrio parahaemolyticus strain TJ-20]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=530082 JHT10_RS20645 WP_005462534.1 2642642..2643160(-) (luxS) [Vibrio parahaemolyticus strain TJ-20]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884