Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   JHS95_RS23230 Genome accession   NZ_CP068628
Coordinates   1505671..1506768 (+) Length   365 a.a.
NCBI ID   WP_025516436.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1500671..1511768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS23200 (JHS95_23085) - 1500807..1501784 (+) 978 WP_029843298.1 Gfo/Idh/MocA family protein -
  JHS95_RS23205 (JHS95_23090) - 1501858..1503195 (-) 1338 WP_237302515.1 MATE family efflux transporter -
  JHS95_RS23210 (JHS95_23095) - 1503318..1503632 (-) 315 WP_005453573.1 DUF496 family protein -
  JHS95_RS23215 (JHS95_23100) - 1503960..1504175 (+) 216 WP_228072880.1 hypothetical protein -
  JHS95_RS23220 (JHS95_23105) - 1504352..1505002 (+) 651 WP_005499314.1 YceH family protein -
  JHS95_RS23225 (JHS95_23110) - 1504999..1505319 (+) 321 WP_021821850.1 GIY-YIG nuclease family protein -
  JHS95_RS23230 (JHS95_23115) luxP 1505671..1506768 (+) 1098 WP_025516436.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  JHS95_RS23235 (JHS95_23120) luxQ 1506768..1509344 (+) 2577 WP_237302232.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  JHS95_RS23240 (JHS95_23125) - 1509556..1510011 (+) 456 WP_005477342.1 MarR family transcriptional regulator -
  JHS95_RS23245 (JHS95_23130) - 1510049..1511104 (+) 1056 WP_015313427.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41367.73 Da        Isoelectric Point: 5.0568

>NTDB_id=530056 JHS95_RS23230 WP_025516436.1 1505671..1506768(+) (luxP) [Vibrio parahaemolyticus strain LH80]
MNKALVLSLISIVGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=530056 JHS95_RS23230 WP_025516436.1 1505671..1506768(+) (luxP) [Vibrio parahaemolyticus strain LH80]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGTCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATTAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641