Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JHS95_RS09925 Genome accession   NZ_CP068627
Coordinates   1994769..1996190 (+) Length   473 a.a.
NCBI ID   WP_021449193.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989769..2001190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS09905 (JHS95_09815) - 1989827..1990579 (-) 753 WP_237302118.1 adenosylcobinamide-GDP ribazoletransferase -
  JHS95_RS09910 (JHS95_09820) cobT 1990624..1991667 (-) 1044 WP_237301662.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  JHS95_RS09915 (JHS95_09825) - 1992351..1993046 (+) 696 WP_237301663.1 NAD(P)H-binding protein -
  JHS95_RS09920 (JHS95_09830) - 1993240..1994613 (+) 1374 WP_005480760.1 L-cystine transporter -
  JHS95_RS09925 (JHS95_09835) sbcB 1994769..1996190 (+) 1422 WP_021449193.1 exodeoxyribonuclease I Machinery gene
  JHS95_RS09930 (JHS95_09840) - 1996246..1996620 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  JHS95_RS09935 (JHS95_09845) - 1996622..1997299 (+) 678 WP_024701131.1 LrgB family protein -
  JHS95_RS09940 (JHS95_09850) cdd 1997664..1998551 (+) 888 WP_020840481.1 cytidine deaminase -
  JHS95_RS09945 (JHS95_09855) purT 1998699..1999874 (+) 1176 WP_025546268.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  JHS95_RS09950 (JHS95_09860) - 1999976..2000626 (-) 651 WP_005480776.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54645.97 Da        Isoelectric Point: 4.9813

>NTDB_id=530035 JHS95_RS09925 WP_021449193.1 1994769..1996190(+) (sbcB) [Vibrio parahaemolyticus strain LH80]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=530035 JHS95_RS09925 WP_021449193.1 1994769..1996190(+) (sbcB) [Vibrio parahaemolyticus strain LH80]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799