Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JHS95_RS02850 Genome accession   NZ_CP068627
Coordinates   583244..583762 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain LH80     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 578244..588762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS02840 (JHS95_02845) gshA 580979..582547 (+) 1569 WP_015297257.1 glutamate--cysteine ligase -
  JHS95_RS02845 (JHS95_02850) - 582572..583177 (+) 606 WP_015297256.1 hypothetical protein -
  JHS95_RS02850 (JHS95_02855) luxS 583244..583762 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  JHS95_RS02855 (JHS95_02860) - 583823..585103 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  JHS95_RS02860 (JHS95_02865) - 585229..586023 (-) 795 WP_005462565.1 cytochrome C assembly family protein -
  JHS95_RS02865 (JHS95_02870) ffh 586236..587618 (+) 1383 WP_005462555.1 signal recognition particle protein -
  JHS95_RS02870 (JHS95_02875) rpsP 587828..588076 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  JHS95_RS02875 (JHS95_02880) rimM 588105..588653 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=530027 JHS95_RS02850 WP_005462534.1 583244..583762(+) (luxS) [Vibrio parahaemolyticus strain LH80]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=530027 JHS95_RS02850 WP_005462534.1 583244..583762(+) (luxS) [Vibrio parahaemolyticus strain LH80]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTGAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884