Detailed information NTG0530024

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JHS95_RS02720
• Genome accession: NZ_CP068627
• Coordinates: 560659..561648 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain LH80
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 555659..566648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS95_RS02685 (JHS95_02690)	ftsB	555667..555948 (+)	282	WP_005455577.1	cell division protein FtsB	-
JHS95_RS02690 (JHS95_02695)	ispD	555950..556654 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JHS95_RS02695 (JHS95_02700)	ispF	556672..557148 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JHS95_RS02700 (JHS95_02705)	truD	557195..558238 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
JHS95_RS02705 (JHS95_02710)	surE	558238..559014 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
JHS95_RS02710 (JHS95_02715)	-	559014..559640 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JHS95_RS02715 (JHS95_02720)	-	559655..560578 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
JHS95_RS02720 (JHS95_02725)	rpoS	560659..561648 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
JHS95_RS02725 (JHS95_02730)	mutS	561727..564288 (-)	2562	WP_025610927.1	DNA mismatch repair protein MutS	-
JHS95_RS02730 (JHS95_02735)	pncC	564373..564855 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
JHS95_RS02735 (JHS95_02740)	recA	565056..566099 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=530024 JHS95_RS02720 WP_005478537.1 560659..561648(+) (rpoS) [Vibrio parahaemolyticus strain LH80]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=530024 JHS95_RS02720 WP_005478537.1 560659..561648(+) (rpoS) [Vibrio parahaemolyticus strain LH80]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTTCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851