Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K8B79_RS09610 Genome accession   NZ_CP082824
Coordinates   1976889..1978316 (-) Length   475 a.a.
NCBI ID   WP_001538915.1    Uniprot ID   -
Organism   Escherichia coli strain SCAID URN1-2021 (19/278)     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1971889..1983316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B79_RS09575 (K8B79_09575) hisL 1972473..1972523 (-) 51 WP_001364200.1 his operon leader peptide -
  K8B79_RS09580 (K8B79_09580) yefM 1972806..1973057 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K8B79_RS09585 (K8B79_09585) yoeB 1973054..1973308 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K8B79_RS09590 (K8B79_09590) yeeZ 1973391..1974215 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  K8B79_RS09595 (K8B79_09595) yeeY 1974261..1975190 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  K8B79_RS09600 (K8B79_09600) yoeI 1975405..1975467 (+) 63 WP_010723108.1 membrane protein YoeI -
  K8B79_RS09605 (K8B79_09605) plaP 1975457..1976815 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  K8B79_RS09610 (K8B79_09610) sbcB 1976889..1978316 (-) 1428 WP_001538915.1 exodeoxyribonuclease I Machinery gene
  K8B79_RS09615 (K8B79_09615) dacD 1978525..1979691 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K8B79_RS09620 (K8B79_09620) sbmC 1979810..1980283 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  K8B79_RS09625 (K8B79_09625) yeeA 1980481..1981539 (+) 1059 WP_001200890.1 FUSC family protein -
  K8B79_RS09630 (K8B79_09630) tmaR 1981711..1982040 (+) 330 WP_000450409.1 DUF496 family protein -
  K8B79_RS09635 (K8B79_09635) - 1982140..1982322 (-) 183 WP_033548241.1 EutP/PduV family microcompartment system protein -
  K8B79_RS09640 (K8B79_09640) - 1982385..1982522 (+) 138 Protein_1909 transposase domain-containing protein -
  K8B79_RS09645 (K8B79_09645) - 1982811..1982903 (-) 93 Protein_1910 DUF957 domain-containing protein -
  K8B79_RS09650 (K8B79_09650) yeeW 1982937..1983131 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54483.79 Da        Isoelectric Point: 5.4720

>NTDB_id=530019 K8B79_RS09610 WP_001538915.1 1976889..1978316(-) (sbcB) [Escherichia coli strain SCAID URN1-2021 (19/278)]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTTWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=530019 K8B79_RS09610 WP_001538915.1 1976889..1978316(-) (sbcB) [Escherichia coli strain SCAID URN1-2021 (19/278)]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCACCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581