Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   JHS83_RS19300 Genome accession   NZ_CP068623
Coordinates   798130..800178 (-) Length   682 a.a.
NCBI ID   WP_021450907.1    Uniprot ID   A0A7T1FLM4
Organism   Vibrio parahaemolyticus strain LH24     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 793130..805178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS83_RS19285 (JHS83_19255) - 794545..795282 (+) 738 WP_053302768.1 EAL domain-containing protein -
  JHS83_RS19290 (JHS83_19260) ylqF 795572..796516 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  JHS83_RS19295 (JHS83_19265) cqsA 796871..798052 (+) 1182 WP_140391549.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  JHS83_RS19300 (JHS83_19270) cqsS 798130..800178 (-) 2049 WP_021450907.1 response regulator Regulator
  JHS83_RS19305 (JHS83_19275) - 800498..801115 (+) 618 WP_005498603.1 HAD family hydrolase -
  JHS83_RS19310 (JHS83_19280) - 801202..801750 (-) 549 WP_140391550.1 GNAT family N-acetyltransferase -
  JHS83_RS19315 (JHS83_19285) - 802022..803146 (+) 1125 WP_005454080.1 acyl-CoA desaturase -
  JHS83_RS19320 (JHS83_19290) dcuC 803500..804867 (+) 1368 WP_005454288.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78273.08 Da        Isoelectric Point: 5.8750

>NTDB_id=530010 JHS83_RS19300 WP_021450907.1 798130..800178(-) (cqsS) [Vibrio parahaemolyticus strain LH24]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAMGEKDQYVMSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDARSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTVNQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQP
GEWSQFTLTFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMADISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKAGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMDGVEASRRIRNSEKPYASVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=530010 JHS83_RS19300 WP_021450907.1 798130..800178(-) (cqsS) [Vibrio parahaemolyticus strain LH24]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTACTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
TATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATCGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTGCCGATATTTTTGTTTATTTAT
GTGTTTGGCAACATGTTCTATTTCCGAAATCAGGTCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCTGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATGGGCGAAAAAGATCAGTATGTGATGAGTGGTGAAGATGTAACCTTGCTCCGTGAAGTGAGCGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACATCGATTGATGAAAACCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATTGAGAGTTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATGCAAGAAGTGAGTTTGACTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGCAGTTCAGACGAGTTTCATATTCATGTGAGTATGCAGAGTAATGACACGGTCAACCAAATTGT
AGTGACGGACAACGGCTCAGGTATTGCGCCAGATGTGATTCGACATATCTTTCAGGACTTCTATACCACAGGTAAATCGG
GCAGTTATGGCCTTGGACTACCGTTTTGTAAGAAAGTCATGCGTTCGTTTGGCGGTAATATTAAGTGCATTTCCCAGCCG
GGAGAGTGGTCACAGTTTACGTTGACTTTTCCGCCTATCACATCAGATACGGTAACGGAAATTAAAGACGAACTGACCAA
AATGAAATCAATTTTATTGGTCAGTAATCAAGACATTATCGTGCAAAAAATGGCTGATATTAGTCGCTTCATGGGATTTG
ATGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTTGTCGATGTG
GAAAGCCTTGATGTTTTAGAGAACCAATTAGACAGAATCGAATCGCTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAGCACAAACCTGCACAACGAGCTAAAAAAGCTGGCCATGACCCGATTTGGGTAGAGACTCAAGCGTGGCTGCTAA
ACACTAAAGCTACGATTGAACGTTTGCTTTACGATTCCACTTATATCTCGTCAACCTTGCCATCTGCGCCTTTAGATAAA
TCCATCAAACGAACCATCATGGTTGTGGATGATAACGAGTCTCTGCGTAAGTTTACGGCGATGTTACTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTGGACACTCTTGAAAAAGAAAATATCGATCTGATTTTAATGG
ATATTGAGATGCCAATCATGGACGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCATCGGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGCTAGATAAAATTGGTTCATCCGGCATGTCCGACTTTATCGTTAA
ACCCGCTGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1FLM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.83

100

0.49