Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U064_RS05485 Genome accession   NC_022911
Coordinates   1123894..1125414 (-) Length   506 a.a.
NCBI ID   WP_023592315.1    Uniprot ID   -
Organism   Helicobacter pylori BM012S     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1118894..1130414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U064_RS05475 (U064_1098) - 1120503..1121771 (-) 1269 WP_023592313.1 restriction endonuclease subunit S -
  U064_RS05480 (U064_1099) - 1121809..1123869 (-) 2061 WP_023592314.1 heavy metal translocating P-type ATPase -
  U064_RS05485 (U064_1100) comM 1123894..1125414 (-) 1521 WP_023592315.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U064_RS05490 (U064_1101) def 1125420..1125944 (-) 525 WP_023592316.1 peptide deformylase -
  U064_RS05495 (U064_1102) clpP 1125949..1126536 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  U064_RS05500 (U064_1103) tig 1126557..1127912 (-) 1356 WP_023592317.1 trigger factor -
  U064_RS05505 (U064_1104) - 1128024..1128860 (-) 837 WP_023592318.1 outer membrane protein -
  U064_RS05510 (U064_1105) hpaA 1128889..1129671 (-) 783 WP_023592319.1 flagellar sheath lipoprotein HpaA -
  U064_RS05515 (U064_1106) moaC 1129784..1130260 (-) 477 WP_023592320.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57174.24 Da        Isoelectric Point: 8.5404

>NTDB_id=52999 U064_RS05485 WP_023592315.1 1123894..1125414(-) (comM) [Helicobacter pylori BM012S]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYTLDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLSAEAKKLLEQAVERFNLSMRSINKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=52999 U064_RS05485 WP_023592315.1 1123894..1125414(-) (comM) [Helicobacter pylori BM012S]
ATGATTAACACGATATTTTGTGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGATTGGCTAATAGTTCTATCCAAGAAGCCAAGCAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCTAAAG
TCATTGCACCTAAGGCGAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATACCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTCA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTCTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTTAGCACAACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCCTTAAGCGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTATTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.628

100

0.976
  comM Acinetobacter baylyi ADP1

36.399

100

0.368

Multiple sequence alignment