Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K8B71_RS01940 Genome accession   NZ_CP082823
Coordinates   424073..425446 (+) Length   457 a.a.
NCBI ID   WP_023127782.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SCAID TST-2021 (7/157)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419073..430446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B71_RS01920 (K8B71_01920) - 419910..420476 (-) 567 WP_003084491.1 hypothetical protein -
  K8B71_RS01925 (K8B71_01925) rsmD 420479..421075 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K8B71_RS01930 (K8B71_01930) - 421075..422562 (-) 1488 WP_003128927.1 M16 family metallopeptidase -
  K8B71_RS01935 (K8B71_01935) - 422555..423952 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  K8B71_RS01940 (K8B71_01940) pilA 424073..425446 (+) 1374 WP_023127782.1 signal recognition particle-docking protein FtsY Machinery gene
  K8B71_RS01945 (K8B71_01945) ftsE 425443..426114 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  K8B71_RS01950 (K8B71_01950) ftsX 426114..427121 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  K8B71_RS01955 (K8B71_01955) rpoH 427235..428089 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  K8B71_RS01960 (K8B71_01960) - 428154..428759 (+) 606 WP_003084511.1 hypothetical protein -
  K8B71_RS01965 (K8B71_01965) mtgA 428764..429495 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  K8B71_RS01970 (K8B71_01970) - 429532..429909 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  K8B71_RS01975 (K8B71_01975) thiS 430012..430212 (+) 201 WP_003110013.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48618.05 Da        Isoelectric Point: 4.5033

>NTDB_id=529880 K8B71_RS01940 WP_023127782.1 424073..425446(+) (pilA) [Pseudomonas aeruginosa strain SCAID TST-2021 (7/157)]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLS
KTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVE
QPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSAS
VIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTG
LALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=529880 K8B71_RS01940 WP_023127782.1 424073..425446(+) (pilA) [Pseudomonas aeruginosa strain SCAID TST-2021 (7/157)]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCATCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTG
CGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCC
AAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGA
CATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGG
CGCGCAAGGAGCTGGCCGACAGCGGTGCGCTGTACAAAGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAG
CAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCAC
CATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCG
CCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCG
GTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATAC
CAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCC
TGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGC
CTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCG
CTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGC
GGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(167-232)

SRP54-type protein, GTPase domain (SRP54)

(252-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.697

96.061

0.449