Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JI735_RS22050 Genome accession   NZ_CP068595
Coordinates   4970209..4971960 (-) Length   583 a.a.
NCBI ID   WP_202676439.1    Uniprot ID   A0A974SCK5
Organism   Paenibacillus sonchi strain LMG 24727     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4965209..4976960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI735_RS22030 (JI735_22030) - 4965636..4966724 (+) 1089 WP_039839568.1 NAD(P)H-dependent flavin oxidoreductase -
  JI735_RS37430 - 4966885..4967235 (+) 351 Protein_4435 alpha/beta fold hydrolase -
  JI735_RS37435 - 4967222..4967515 (+) 294 WP_325175528.1 alpha/beta fold hydrolase -
  JI735_RS22040 (JI735_22040) murI 4967575..4968363 (+) 789 WP_039839567.1 glutamate racemase -
  JI735_RS22045 (JI735_22045) rcrQ 4968449..4970209 (-) 1761 WP_039839566.1 ABC transporter ATP-binding protein Regulator
  JI735_RS22050 (JI735_22050) rcrP 4970209..4971960 (-) 1752 WP_202676439.1 ABC transporter ATP-binding protein Regulator
  JI735_RS22055 (JI735_22055) - 4972119..4973174 (-) 1056 WP_039839560.1 sensor histidine kinase -
  JI735_RS22060 (JI735_22060) - 4973171..4973845 (-) 675 WP_039839559.1 response regulator transcription factor -
  JI735_RS22065 (JI735_22065) - 4973981..4974463 (-) 483 WP_202677678.1 YheC/YheD family protein -
  JI735_RS37955 - 4974414..4974818 (-) 405 WP_411829941.1 YheC/YheD family protein -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63789.15 Da        Isoelectric Point: 6.3210

>NTDB_id=529746 JI735_RS22050 WP_202676439.1 4970209..4971960(-) (rcrP) [Paenibacillus sonchi strain LMG 24727]
MVKILKYLNPKEWALFGISILFIVAQVWLDLELPDYMSEITRLVQTPGSEMSEIMATGGWMLLCALGSLATSIVVAGIAA
RIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWALLKITGKSWEWSLT
TGIAVGVLILIVGICVVLVLPKFQKLQQLTDNLNRVSRENLTGLRIIRAYNAEGYQENKFSEANNVLTRTNLFANNVLAV
LMPSITLIMSGLSLAIYWVGASLIQSADMGAKMGLFSDMIVFSSYAIQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLMNGSLTASASKLAGEVEFRKVSFKYPDADDYVLKDISFTAKTGETVAFIGSTGCGKSTVVNLIPRFYDATEGEVLVN
GVNVNQYEESALRNKMGYVSQKAVLFGGTVTSNIAFGDNGSDASAEVVDAVYISQASDFVEKMEGSYDAHIAQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKGARGTTMLIVAQRIGTIKDADKIIVLEEGRIAGMGTHE
ELMDTCSVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=529746 JI735_RS22050 WP_202676439.1 4970209..4971960(-) (rcrP) [Paenibacillus sonchi strain LMG 24727]
ATGGTCAAAATACTCAAATACTTGAACCCGAAAGAATGGGCCCTCTTCGGCATCAGCATCCTGTTCATCGTTGCCCAGGT
GTGGCTGGATCTGGAGCTGCCCGATTATATGAGCGAAATTACCCGGCTCGTCCAGACACCGGGAAGCGAAATGAGCGAAA
TCATGGCTACCGGCGGCTGGATGCTGCTCTGTGCGCTCGGCAGTCTGGCAACCTCAATCGTTGTAGCCGGCATCGCCGCA
AGAATCGCCGCCAACTTCTCTTCCCGGCTCCGTTCCAAGCTGTTCGATAAGGTGCAGTCCTTCTCCATGGAGGAAATCAA
CAACTTCTCGACAGCCAGCCTGATTACCCGTTCGACCAACGATATTACCCAGGTGCAGATGCTGATTGTCATCGGATTGC
AGCTGCTCGTGAAGGCTCCGATCCTTGCGGTGTGGGCGCTGCTCAAGATTACCGGCAAAAGCTGGGAGTGGTCGCTGACG
ACCGGCATTGCCGTCGGTGTGCTTATCCTGATCGTCGGAATCTGTGTCGTGCTTGTGCTGCCGAAGTTCCAGAAGCTGCA
GCAATTGACGGATAATCTGAACCGGGTGTCCAGAGAAAATCTGACCGGCCTGCGGATCATCCGTGCATATAATGCCGAAG
GCTATCAGGAAAACAAGTTCAGTGAGGCCAACAATGTGCTTACCCGCACGAACCTGTTCGCAAACAACGTACTGGCTGTG
CTTATGCCAAGCATCACCCTGATTATGAGCGGTCTGAGCCTCGCCATTTATTGGGTAGGCGCGTCGCTGATCCAATCCGC
CGATATGGGCGCCAAAATGGGACTGTTCTCGGATATGATCGTCTTCTCCTCTTATGCTATTCAGGTAGTTATGGCCTTTA
TGATGCTCATCATGATCTTCATTCTGATGCCCCGCGCCCATGTCTCAGCCAAACGGATCAACGAAGTGCTGGATACCAAG
CCGAGCCTGATGAACGGATCGCTGACCGCCTCTGCCTCCAAGCTTGCCGGCGAGGTTGAATTCAGAAAGGTCAGCTTCAA
ATATCCCGATGCGGATGATTATGTCCTCAAAGACATCAGCTTTACAGCCAAAACAGGCGAAACCGTCGCCTTCATCGGTT
CGACCGGCTGCGGCAAAAGCACTGTCGTTAACCTCATCCCCCGCTTCTATGATGCTACTGAAGGCGAGGTGCTTGTCAAC
GGGGTCAATGTCAATCAATACGAAGAAAGCGCGCTCCGCAACAAGATGGGTTATGTCTCGCAGAAGGCGGTGTTGTTCGG
CGGAACCGTGACTTCCAATATCGCCTTCGGCGACAACGGCAGCGATGCTTCCGCTGAAGTGGTAGATGCGGTGTATATCT
CCCAGGCTTCAGATTTCGTCGAAAAAATGGAAGGCAGCTATGATGCGCACATCGCCCAGGGCGGCACCAATCTGTCCGGC
GGCCAGAAGCAGCGGCTATCCATTGCCCGGGCGATCGCCCGCCGTCCGGAAATTCTGATTTTTGACGATTCCTTCTCCGC
GCTTGATTACAAGACGGACCGCAAACTGCGCAGCGAACTGAAAAAGGGTGCCCGCGGAACCACAATGTTGATTGTCGCCC
AGCGGATCGGCACCATTAAGGATGCAGACAAAATTATCGTGCTGGAAGAAGGCCGCATCGCTGGCATGGGCACACATGAG
GAATTAATGGACACCTGCAGCGTTTATCAGGAGATTGCCTATTCGCAGCTGTCCAAGGAGGAATTGGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-504)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.349

100

0.535