Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JI735_RS22045 Genome accession   NZ_CP068595
Coordinates   4968449..4970209 (-) Length   586 a.a.
NCBI ID   WP_039839566.1    Uniprot ID   A0A974SBI0
Organism   Paenibacillus sonchi strain LMG 24727     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4963449..4975209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI735_RS22025 (JI735_22025) - 4964689..4965299 (+) 611 Protein_4433 sugar O-acetyltransferase -
  JI735_RS22030 (JI735_22030) - 4965636..4966724 (+) 1089 WP_039839568.1 NAD(P)H-dependent flavin oxidoreductase -
  JI735_RS37430 - 4966885..4967235 (+) 351 Protein_4435 alpha/beta fold hydrolase -
  JI735_RS37435 - 4967222..4967515 (+) 294 WP_325175528.1 alpha/beta fold hydrolase -
  JI735_RS22040 (JI735_22040) murI 4967575..4968363 (+) 789 WP_039839567.1 glutamate racemase -
  JI735_RS22045 (JI735_22045) rcrQ 4968449..4970209 (-) 1761 WP_039839566.1 ABC transporter ATP-binding protein Regulator
  JI735_RS22050 (JI735_22050) rcrP 4970209..4971960 (-) 1752 WP_202676439.1 ABC transporter ATP-binding protein Regulator
  JI735_RS22055 (JI735_22055) - 4972119..4973174 (-) 1056 WP_039839560.1 sensor histidine kinase -
  JI735_RS22060 (JI735_22060) - 4973171..4973845 (-) 675 WP_039839559.1 response regulator transcription factor -
  JI735_RS22065 (JI735_22065) - 4973981..4974463 (-) 483 WP_202677678.1 YheC/YheD family protein -
  JI735_RS37955 - 4974414..4974818 (-) 405 WP_411829941.1 YheC/YheD family protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64171.04 Da        Isoelectric Point: 5.8407

>NTDB_id=529745 JI735_RS22045 WP_039839566.1 4968449..4970209(-) (rcrQ) [Paenibacillus sonchi strain LMG 24727]
MTANNKQPGTWSKLLRYCRNHIPVVLVAVLSAAAGTVLTLLGPDQLSEMTDLITQGIAAGIDMEAIASIGLYLVIIYGIS
AVLSLLQGLIMSSVTQKVSKRLRGDLSHKMNRLPISYYNKSTTGDILSRVTNDVDTIGQALNQSVGTLVTALSLFVGSIV
MMLKTNWIMTVTAVVATIIGFGLMTVIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNAEAQMRGAFEDLNRNLK
NSVFKAQFLSGMMMPIMMFIGNLGFVAVCVVGAVLATNGDISFGVIVAFMMYVRFFTQPLSQIAQAAQSLQSASAASKRV
FEFLEAEEMDDESQKTARLEAATGKVKFEHVQFAYEGADNLVIKDFSTEVQSGQKIAIVGPTGAGKTTLVNLLIRFNELT
GGEIYIDDTPISSLTRENIHDQFCMVLQDTWLFEGTIRENLMYNQTGITDQDIQEACKSVGLHHFIQTLSAGYDTVLNDK
VNLSAGQKQQLTIARAMLKAAPMLILDEATSSVDTRTELLIQQAMDRLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHSELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=529745 JI735_RS22045 WP_039839566.1 4968449..4970209(-) (rcrQ) [Paenibacillus sonchi strain LMG 24727]
ATGACTGCAAACAACAAACAACCCGGCACCTGGAGCAAGCTTCTCCGATATTGCCGTAATCATATTCCTGTGGTGCTGGT
AGCCGTGCTCAGTGCGGCCGCCGGAACCGTGTTGACCTTGCTTGGTCCGGATCAGCTCTCCGAGATGACGGACCTGATTA
CCCAGGGCATCGCTGCCGGAATCGATATGGAGGCGATCGCTTCTATCGGATTGTATCTGGTCATCATCTATGGAATCAGT
GCTGTACTCTCTCTGTTGCAGGGACTCATCATGTCGTCGGTGACGCAAAAGGTCTCCAAACGTTTAAGAGGCGATCTGTC
GCACAAAATGAACAGACTGCCGATCTCTTATTACAATAAATCAACAACCGGCGACATTCTCTCCCGGGTAACCAATGATG
TGGATACGATCGGGCAAGCCTTGAATCAAAGCGTCGGTACGCTGGTCACCGCCCTCTCGCTGTTCGTCGGGTCCATCGTC
ATGATGCTCAAGACGAACTGGATCATGACCGTTACCGCAGTTGTCGCTACAATCATCGGTTTTGGCCTGATGACGGTTAT
TATGAAGAAGTCCCAGAAGTATTTTCAGAGCCAGCAAGAGTATCTGGGCAAAATCAACGGCCATGTGGAGGAAGTCTACA
CCGGACATACTGTTGTAAAAGCCTACAATGCCGAAGCGCAGATGCGCGGCGCATTTGAAGACCTGAACCGCAATCTGAAA
AACAGCGTGTTCAAGGCGCAGTTCCTCTCCGGCATGATGATGCCGATCATGATGTTTATCGGGAATTTGGGTTTCGTGGC
CGTCTGTGTGGTTGGGGCTGTACTGGCAACGAACGGAGATATTTCCTTCGGGGTCATCGTCGCCTTTATGATGTACGTCC
GCTTCTTTACCCAGCCTCTCTCGCAGATCGCCCAGGCTGCGCAAAGCCTGCAATCAGCTTCGGCGGCCAGCAAGCGTGTC
TTTGAATTTTTAGAGGCCGAGGAAATGGACGATGAGAGCCAAAAGACGGCACGACTGGAAGCTGCAACGGGCAAAGTGAA
GTTCGAGCACGTGCAATTTGCCTACGAGGGTGCGGATAATCTGGTGATCAAAGACTTCTCCACCGAGGTTCAGTCGGGGC
AAAAGATCGCGATCGTCGGCCCGACCGGCGCCGGCAAAACCACGCTCGTCAATCTGCTCATCCGCTTCAATGAACTCACG
GGCGGAGAGATTTATATTGACGATACGCCGATTAGCAGCCTGACCCGGGAGAACATCCATGACCAGTTCTGTATGGTGCT
GCAGGACACCTGGCTGTTTGAAGGAACGATCCGGGAGAACCTGATGTACAACCAAACCGGCATCACCGATCAAGACATTC
AGGAGGCATGCAAATCGGTGGGCCTGCACCACTTCATCCAGACCTTAAGCGCCGGCTACGATACGGTATTGAACGACAAA
GTCAACCTGTCCGCCGGCCAAAAACAACAGTTGACCATCGCCCGCGCCATGCTTAAAGCTGCGCCGATGCTCATTCTCGA
CGAGGCGACCAGCTCGGTCGACACCCGGACGGAGCTGCTGATCCAGCAGGCGATGGACCGGCTGATGGAAGGCCGGACCT
CCTTCGTCATCGCCCATCGGCTCTCGACCATCAAGAATGCCGATGTCATTCTGGTGCTGAAGGACGGGGACATCCTGGAA
AGCGGAAGCCACAGCGAGCTGCTGGCCAAAAACGGCTTCTACGCCGAGCTGTACAACAGCCAATTTGAGCAGGCCTCATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.034

98.976

0.555