Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JI735_RS05580 Genome accession   NZ_CP068595
Coordinates   1186189..1187556 (-) Length   455 a.a.
NCBI ID   WP_039832588.1    Uniprot ID   -
Organism   Paenibacillus sonchi strain LMG 24727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1181189..1192556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI735_RS05555 (JI735_05555) ispD 1181670..1182368 (-) 699 WP_039832592.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JI735_RS05560 (JI735_05560) - 1182464..1183318 (-) 855 Protein_1083 PIN/TRAM domain-containing protein -
  JI735_RS37705 - 1183372..1183551 (-) 180 WP_411830055.1 hypothetical protein -
  JI735_RS05565 (JI735_05565) - 1183767..1184162 (+) 396 WP_025706608.1 hypothetical protein -
  JI735_RS05570 (JI735_05570) pssA 1184306..1185043 (-) 738 WP_039832589.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  JI735_RS05575 (JI735_05575) disA 1185108..1186175 (-) 1068 WP_020427098.1 DNA integrity scanning diadenylate cyclase DisA -
  JI735_RS05580 (JI735_05580) radA 1186189..1187556 (-) 1368 WP_039832588.1 DNA repair protein RadA Machinery gene
  JI735_RS05585 (JI735_05585) clpC 1187798..1190266 (-) 2469 WP_039832587.1 ATP-dependent protease ATP-binding subunit ClpC -
  JI735_RS05590 (JI735_05590) - 1190303..1191367 (-) 1065 WP_039832586.1 protein arginine kinase -
  JI735_RS05595 (JI735_05595) - 1191396..1191920 (-) 525 WP_020427102.1 UvrB/UvrC motif-containing protein -
  JI735_RS05600 (JI735_05600) - 1191950..1192411 (-) 462 WP_020427103.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49659.51 Da        Isoelectric Point: 6.5032

>NTDB_id=529728 JI735_RS05580 WP_039832588.1 1186189..1187556(-) (radA) [Paenibacillus sonchi strain LMG 24727]
MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMTAPIFQSKEKAQSIINIESDKEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEA
IEQIQPQFLVIDSIQTVFMPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLTEVENPSELFLSERPLGVAGSAVVASMEGTRPVLVELQALVAATHFPS
PRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGE
VRGVSRAETRVKEAAKLGFRRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=529728 JI735_RS05580 WP_039832588.1 1186189..1187556(-) (radA) [Paenibacillus sonchi strain LMG 24727]
ATGGCTAAACCAAAAACGAAATTTTTCTGCACCGAATGCGGCTATGAATCGCCGAAGTGGTTCGGTAAGTGTCCCGGCTG
CCAGGCATGGAATTCCATGGTGGAAGAGACGGAAAGCGTAGTTAAAACACAAGGTATGACTGCACCGATTTTTCAGAGTA
AAGAAAAGGCGCAATCGATCATAAATATAGAAAGTGATAAGGAGCCGCGTATCCTGACAGGCATTGGTGAGCTTAACCGT
GTGCTTGGGGGAGGAATTGTGCCCGGCTCGCTGGTGCTGGTAGGCGGTGATCCAGGGATCGGTAAATCGACGCTCCTGCT
GCAGACCTCCCATGCGCTGACCACCCAGGGATTGCGTGTACTGTATATTTCAGGAGAAGAGTCCGTCCGGCAAACAAAGC
TGCGTGCAGATCGCCTAGGGGCGCTGTCGGCAGAGCTGTATGTGCTGTGTGAGACAAATATGGAGAGCATCGAAGAAGCC
ATTGAACAGATCCAGCCCCAATTTCTTGTCATTGACTCCATTCAGACCGTATTTATGCCGGAAGTGACAAGCGCACCCGG
CAGTGTGACGCAGGTCCGGGAATGTACAACAAGGTTCATGCGGATTGCCAAAATTCGCGGAATTGCCACGGTTCTGGTAG
GGCATGTGACCAAAGAGGGGGCTATTGCCGGACCGCGAATGCTGGAGCATATGGTCGATTGTGTGCTCTATTTTGAAGGG
GAGCGGCATCACACGTACCGGTTGCTGCGAGCGGTCAAAAACCGGTTTGGTTCCACTAATGAGATTGGTATTTTTGAGAT
GGGGGAAATCGGGCTTACCGAGGTGGAGAATCCCTCCGAGCTCTTTTTGTCGGAGCGCCCGCTGGGAGTAGCCGGATCAG
CCGTTGTTGCCAGTATGGAGGGCACCAGACCCGTGCTTGTCGAGCTTCAGGCGCTGGTAGCCGCCACCCATTTCCCTTCC
CCGCGGCGGATGTGCACGGGCATGGATCATCAAAGAATGGCACTTATTATTGCGGTACTCGAGAAGCGGATGGGGATGTT
TCTGCAGAACCAGGATGCATACCTCAATGTTGCTGGCGGGGTGAAGCTGGATGAACCAGCCATTGATCTGGCGGTTGCCG
TCAGTATTGCTTCCAGCTTCCGTGATATATCGACAAAGCCTTACGATGTTTTTTTTGGCGAAGTTGGACTTACTGGAGAA
GTGAGAGGGGTTTCCCGTGCGGAGACACGCGTCAAGGAGGCTGCTAAGCTGGGCTTCCGGAGAGTCATAATGCCCGAAAA
AAGCATGAAAGGCTGGAAGCATCCGCAGGATATCCAGATTATTGGCGTCAGCACCGTAGCAGATGCACTAGCGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(76-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.657
  radA Streptococcus pneumoniae Rx1

58.889

98.901

0.582
  radA Streptococcus pneumoniae D39

58.889

98.901

0.582
  radA Streptococcus pneumoniae R6

58.889

98.901

0.582
  radA Streptococcus pneumoniae TIGR4

58.889

98.901

0.582
  radA Streptococcus mitis NCTC 12261

58.889

98.901

0.582
  radA Streptococcus mitis SK321

58.889

98.901

0.582