Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMY44_RS09110 Genome accession   NZ_CP068591
Coordinates   1958153..1958782 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EF7-18-58     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1953153..1963782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMY44_RS09090 (JMY44_09090) ycbZ 1953543..1955303 (-) 1761 WP_000156526.1 Lon protease family protein -
  JMY44_RS09095 (JMY44_09095) matP 1955489..1955941 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  JMY44_RS09100 (JMY44_09100) ompA 1956016..1957068 (-) 1053 WP_000750419.1 porin OmpA -
  JMY44_RS09105 (JMY44_09105) sulA 1957425..1957934 (-) 510 WP_063100170.1 SOS-induced cell division inhibitor SulA -
  JMY44_RS09110 (JMY44_09110) sxy/tfoX 1958153..1958782 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMY44_RS09115 (JMY44_09115) yccS 1958745..1960907 (-) 2163 WP_000875044.1 YccS family putative transporter -
  JMY44_RS09120 (JMY44_09120) yccF 1960917..1961363 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JMY44_RS09125 (JMY44_09125) helD 1961486..1963540 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=529711 JMY44_RS09110 WP_000839153.1 1958153..1958782(+) (sxy/tfoX) [Escherichia coli strain EF7-18-58]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=529711 JMY44_RS09110 WP_000839153.1 1958153..1958782(+) (sxy/tfoX) [Escherichia coli strain EF7-18-58]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAGGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1