Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   JL476_RS05985 Genome accession   NZ_CP068586
Coordinates   1145144..1146103 (+) Length   319 a.a.
NCBI ID   WP_212145321.1    Uniprot ID   -
Organism   Campylobacter coli strain CC19CH076     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140144..1151103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL476_RS10115 - 1140633..1140764 (-) 132 WP_004283885.1 hypothetical protein -
  JL476_RS05955 (JL476_05960) - 1140950..1141222 (-) 273 WP_002780626.1 hypothetical protein -
  JL476_RS05960 (JL476_05965) - 1141319..1142191 (-) 873 WP_004283883.1 sulfatase-like hydrolase/transferase -
  JL476_RS10120 (JL476_05970) - 1142100..1142288 (-) 189 WP_032682936.1 sulfatase-like hydrolase/transferase -
  JL476_RS05970 (JL476_05975) - 1142298..1142642 (-) 345 WP_212145403.1 hypothetical protein -
  JL476_RS05975 (JL476_05980) - 1143128..1144255 (-) 1128 WP_002780621.1 polysaccharide pyruvyl transferase family protein -
  JL476_RS05980 (JL476_05985) - 1144267..1145085 (-) 819 WP_002780620.1 glycosyltransferase family 2 protein -
  JL476_RS05985 (JL476_05990) waaF 1145144..1146103 (+) 960 WP_212145321.1 lipopolysaccharide heptosyltransferase II Regulator
  JL476_RS05990 (JL476_05995) gmhA 1146084..1146644 (-) 561 WP_052783332.1 D-sedoheptulose 7-phosphate isomerase -
  JL476_RS05995 (JL476_06000) rfaE1 1146641..1148026 (-) 1386 WP_052774385.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  JL476_RS06000 (JL476_06005) rfaD 1148019..1148972 (-) 954 WP_002831601.1 ADP-glyceromanno-heptose 6-epimerase -
  JL476_RS06005 (JL476_06010) - 1148969..1149532 (-) 564 WP_002820231.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  JL476_RS06010 (JL476_06015) - 1149609..1149908 (+) 300 WP_002777238.1 cytochrome c -
  JL476_RS06015 (JL476_06020) - 1149938..1150138 (-) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36700.21 Da        Isoelectric Point: 10.2941

>NTDB_id=529685 JL476_RS05985 WP_212145321.1 1145144..1146103(+) (waaF) [Campylobacter coli strain CC19CH076]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKTIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGINPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=529685 JL476_RS05985 WP_212145321.1 1145144..1146103(+) (waaF) [Campylobacter coli strain CC19CH076]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAACCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGAATCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.73

100

0.937