Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   JMJ71_RS03350 Genome accession   NZ_CP068581
Coordinates   653175..653621 (+) Length   148 a.a.
NCBI ID   WP_052786221.1    Uniprot ID   A0A5T0V754
Organism   Campylobacter coli strain CC19CH075     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 648175..658621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ71_RS03330 (JMJ71_03330) - 649127..650551 (+) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  JMJ71_RS03335 (JMJ71_03335) uvrB 650586..652559 (-) 1974 WP_131235528.1 excinuclease ABC subunit UvrB -
  JMJ71_RS03340 (JMJ71_03340) - 652713..652943 (+) 231 WP_002776426.1 hypothetical protein -
  JMJ71_RS03345 (JMJ71_03345) - 652933..653178 (+) 246 WP_002776428.1 hypothetical protein -
  JMJ71_RS03350 (JMJ71_03350) Cj0683 653175..653621 (+) 447 WP_052786221.1 type II secretion system protein Machinery gene
  JMJ71_RS03355 (JMJ71_03355) - 653618..655456 (+) 1839 WP_002838282.1 primosomal protein N' -
  JMJ71_RS03360 (JMJ71_03360) ispG 655516..656589 (+) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  JMJ71_RS03365 (JMJ71_03365) flgH 656673..657371 (-) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17284.15 Da        Isoelectric Point: 8.4538

>NTDB_id=529657 JMJ71_RS03350 WP_052786221.1 653175..653621(+) (Cj0683) [Campylobacter coli strain CC19CH075]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEILNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=529657 JMJ71_RS03350 WP_052786221.1 653175..653621(+) (Cj0683) [Campylobacter coli strain CC19CH075]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATACTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0V754

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.432

100

0.574