Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   K8B76_RS08445 Genome accession   NZ_CP082820
Coordinates   1708340..1709050 (+) Length   236 a.a.
NCBI ID   WP_000760675.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SCAID PHRX1-2021     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703340..1714050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B76_RS08430 (K8B76_08430) - 1703881..1704129 (-) 249 WP_000364990.1 YneF family protein -
  K8B76_RS08435 (K8B76_08435) treC 1704385..1706010 (-) 1626 WP_054363397.1 alpha,alpha-phosphotrehalase -
  K8B76_RS08440 (K8B76_08440) treP 1706188..1708155 (-) 1968 WP_000514311.1 PTS system trehalose-specific EIIBC component -
  K8B76_RS08445 (K8B76_08445) treR 1708340..1709050 (+) 711 WP_000760675.1 trehalose operon repressor Regulator
  K8B76_RS08450 (K8B76_08450) - 1709205..1710539 (+) 1335 Protein_1693 ISL3 family transposase -
  K8B76_RS08455 (K8B76_08455) - 1710614..1711540 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  K8B76_RS08460 (K8B76_08460) amiE 1711551..1712618 (-) 1068 WP_000159564.1 ABC transporter ATP-binding protein Regulator
  K8B76_RS08465 (K8B76_08465) amiD 1712627..1713553 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27621.80 Da        Isoelectric Point: 8.9698

>NTDB_id=529630 K8B76_RS08445 WP_000760675.1 1708340..1709050(+) (treR) [Streptococcus pneumoniae strain SCAID PHRX1-2021]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKEPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=529630 K8B76_RS08445 WP_000760675.1 1708340..1709050(+) (treR) [Streptococcus pneumoniae strain SCAID PHRX1-2021]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGAACCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.746

100

0.597