Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   JL477_RS03585 Genome accession   NZ_CP068567
Coordinates   667417..667854 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain CC19PF065     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 662417..672854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS03550 (JL477_03550) - 662770..662964 (-) 195 WP_002821520.1 hypothetical protein -
  JL477_RS03555 (JL477_03555) - 662974..663285 (-) 312 WP_002847205.1 hypothetical protein -
  JL477_RS03560 (JL477_03560) - 663352..663981 (-) 630 WP_052777168.1 helix-turn-helix transcriptional regulator -
  JL477_RS09760 - 664577..664729 (+) 153 WP_224374383.1 hypothetical protein -
  JL477_RS03570 (JL477_03570) uvrB 664831..666804 (-) 1974 WP_212147177.1 excinuclease ABC subunit UvrB -
  JL477_RS03575 (JL477_03575) - 666958..667188 (+) 231 WP_002852327.1 hypothetical protein -
  JL477_RS03580 (JL477_03580) - 667178..667420 (+) 243 WP_002854947.1 hypothetical protein -
  JL477_RS03585 (JL477_03585) Cj0683 667417..667854 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JL477_RS03590 (JL477_03590) priA 667836..669689 (+) 1854 WP_002860009.1 primosomal protein N' -
  JL477_RS03595 (JL477_03595) cipA 669699..671094 (-) 1396 Protein_699 DUF2972 domain-containing protein -
  JL477_RS03600 (JL477_03600) ispG 671240..672313 (+) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=529580 JL477_RS03585 WP_002852324.1 667417..667854(+) (Cj0683) [Campylobacter jejuni strain CC19PF065]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=529580 JL477_RS03585 WP_002852324.1 667417..667854(+) (Cj0683) [Campylobacter jejuni strain CC19PF065]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1