Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   JMJ69_RS01555 Genome accession   NZ_CP068566
Coordinates   312048..312359 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain CC19DZ037     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307048..317359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ69_RS01545 (JMJ69_01545) - 307722..308360 (+) 639 WP_057993149.1 HAD family hydrolase -
  JMJ69_RS01550 (JMJ69_01550) nifJ 308464..312024 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  JMJ69_RS01555 (JMJ69_01555) ctsR 312048..312359 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  JMJ69_RS01560 (JMJ69_01560) - 312337..313095 (+) 759 Protein_300 secretin N-terminal domain-containing protein -
  JMJ69_RS01565 (JMJ69_01565) - 313658..314287 (+) 630 WP_002784646.1 S24 family peptidase -
  JMJ69_RS01570 (JMJ69_01570) - 314368..314688 (+) 321 WP_002784647.1 hypothetical protein -
  JMJ69_RS01575 (JMJ69_01575) - 314698..314892 (+) 195 WP_002784648.1 hypothetical protein -
  JMJ69_RS01580 (JMJ69_01580) - 314972..315259 (+) 288 WP_002784651.1 hypothetical protein -
  JMJ69_RS01585 (JMJ69_01585) - 315287..316102 (-) 816 WP_057981102.1 DNA adenine methylase -
  JMJ69_RS01590 (JMJ69_01590) - 316207..316695 (-) 489 WP_060794138.1 phage virion morphogenesis protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=529549 JMJ69_RS01555 WP_002779316.1 312048..312359(+) (ctsR) [Campylobacter coli strain CC19DZ037]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=529549 JMJ69_RS01555 WP_002779316.1 312048..312359(+) (ctsR) [Campylobacter coli strain CC19DZ037]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553