Detailed information NTG0529538

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: JMJ70_RS03435
• Genome accession: NZ_CP068565
• Coordinates: 671454..672413 (-)
• Length: 319 a.a.
• NCBI ID: WP_002790123.1
• Uniprot ID: -
• Organism: Campylobacter coli strain CC19DZ036
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 666454..677413

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMJ70_RS03405 (JMJ70_03405)	-	667420..667620 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
JMJ70_RS03410 (JMJ70_03410)	-	667650..667949 (-)	300	WP_002777238.1	cytochrome c	-
JMJ70_RS03415 (JMJ70_03415)	-	668026..668588 (+)	563	Protein_670	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
JMJ70_RS03420 (JMJ70_03420)	rfaD	668585..669538 (+)	954	WP_212202810.1	ADP-glyceromanno-heptose 6-epimerase	-
JMJ70_RS03425 (JMJ70_03425)	rfaE1	669531..670916 (+)	1386	WP_134162852.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
JMJ70_RS03430 (JMJ70_03430)	gmhA	670913..671473 (+)	561	WP_002780618.1	D-sedoheptulose 7-phosphate isomerase	-
JMJ70_RS03435 (JMJ70_03435)	waaF	671454..672413 (-)	960	WP_002790123.1	lipopolysaccharide heptosyltransferase II	Regulator
JMJ70_RS03440 (JMJ70_03440)	-	672472..673293 (+)	822	WP_212202811.1	glycosyltransferase family 2 protein	-
JMJ70_RS03445 (JMJ70_03445)	-	673336..674703 (+)	1368	WP_002844799.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
JMJ70_RS03450 (JMJ70_03450)	gmd	674704..675843 (+)	1140	WP_002844800.1	GDP-mannose 4,6-dehydratase	-
JMJ70_RS03455 (JMJ70_03455)	-	675836..676774 (+)	939	WP_002844801.1	NAD-dependent epimerase/dehydratase family protein	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36735.26 Da
• Isoelectric Point: 10.3041

>NTDB_id=529538 JMJ70_RS03435 WP_002790123.1 671454..672413(-) (waaF) [Campylobacter coli strain CC19DZ036]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide

• Length: 960 bp

>NTDB_id=529538 JMJ70_RS03435 WP_002790123.1 671454..672413(-) (waaF) [Campylobacter coli strain CC19DZ036]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.671	100	0.947