Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JKJ03_RS16690 Genome accession   NZ_CP068563
Coordinates   3417342..3418727 (-) Length   461 a.a.
NCBI ID   WP_202735745.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMT319     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3412342..3423727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ03_RS16655 (JKJ03_16655) flgL 3412517..3413434 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  JKJ03_RS16660 (JKJ03_16660) flgK 3413446..3414963 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  JKJ03_RS16665 (JKJ03_16665) - 3414979..3415461 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JKJ03_RS16670 (JKJ03_16670) flgM 3415476..3415742 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JKJ03_RS16675 (JKJ03_16675) - 3415812..3416231 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  JKJ03_RS16680 (JKJ03_16680) comFC 3416305..3416994 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  JKJ03_RS16685 (JKJ03_16685) - 3417000..3417284 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  JKJ03_RS16690 (JKJ03_16690) comFA 3417342..3418727 (-) 1386 WP_202735745.1 DEAD/DEAH box helicase Machinery gene
  JKJ03_RS16695 (JKJ03_16695) - 3418835..3419683 (-) 849 WP_071392365.1 DegV family protein -
  JKJ03_RS16700 (JKJ03_16700) degU 3419781..3420470 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JKJ03_RS16705 (JKJ03_16705) degS 3420547..3421710 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  JKJ03_RS16710 (JKJ03_16710) - 3421933..3422580 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52523.81 Da        Isoelectric Point: 9.9983

>NTDB_id=529493 JKJ03_RS16690 WP_202735745.1 3417342..3418727(-) (comFA) [Bacillus velezensis strain GUMT319]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLKRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQELNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=529493 JKJ03_RS16690 WP_202735745.1 3417342..3418727(-) (comFA) [Bacillus velezensis strain GUMT319]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAATCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGATGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGAAGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGGAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627