Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JKJ03_RS08545 Genome accession   NZ_CP068563
Coordinates   1753380..1753814 (+) Length   144 a.a.
NCBI ID   WP_202735984.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMT319     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1748380..1758814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ03_RS08540 (JKJ03_08540) - 1751880..1753091 (-) 1212 WP_202735983.1 cytochrome P450 family protein -
  JKJ03_RS08545 (JKJ03_08545) nucA/comI 1753380..1753814 (+) 435 WP_202735984.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JKJ03_RS08550 (JKJ03_08550) - 1753914..1754630 (+) 717 WP_015417517.1 YoaK family protein -
  JKJ03_RS08555 (JKJ03_08555) - 1754664..1755026 (-) 363 WP_007410383.1 hypothetical protein -
  JKJ03_RS08560 (JKJ03_08560) - 1755219..1756547 (-) 1329 WP_202735985.1 S8 family peptidase -
  JKJ03_RS08565 (JKJ03_08565) - 1756726..1756959 (+) 234 WP_202735986.1 hypothetical protein -
  JKJ03_RS08570 (JKJ03_08570) - 1757215..1757922 (+) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  JKJ03_RS08575 (JKJ03_08575) - 1757984..1758436 (+) 453 WP_070081858.1 OsmC family protein -
  JKJ03_RS08580 (JKJ03_08580) - 1758450..1758803 (-) 354 WP_003154073.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15556.52 Da        Isoelectric Point: 7.2418

>NTDB_id=529463 JKJ03_RS08545 WP_202735984.1 1753380..1753814(+) (nucA/comI) [Bacillus velezensis strain GUMT319]
MNAFMKWVASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=529463 JKJ03_RS08545 WP_202735984.1 1753380..1753814(+) (nucA/comI) [Bacillus velezensis strain GUMT319]
ATGAATGCGTTTATGAAATGGGTGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCAGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486