Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JKJ03_RS07140 Genome accession   NZ_CP068563
Coordinates   1364365..1364649 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMT319     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359365..1369649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ03_RS07120 (JKJ03_07120) - 1360610..1361518 (+) 909 WP_202735946.1 ketopantoate reductase family protein -
  JKJ03_RS07125 (JKJ03_07125) - 1361549..1362781 (-) 1233 WP_070081754.1 aminopeptidase -
  JKJ03_RS07130 (JKJ03_07130) - 1362882..1363016 (-) 135 WP_003154559.1 protein YkpC -
  JKJ03_RS07135 (JKJ03_07135) mreBH 1363088..1364095 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  JKJ03_RS07140 (JKJ03_07140) abrB 1364365..1364649 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JKJ03_RS07145 (JKJ03_07145) - 1364822..1366126 (+) 1305 WP_039063008.1 ATP-binding protein -
  JKJ03_RS07150 (JKJ03_07150) - 1366128..1366955 (+) 828 WP_039063009.1 gamma-glutamylcyclotransferase -
  JKJ03_RS07155 (JKJ03_07155) ktrC 1366996..1367661 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  JKJ03_RS07160 (JKJ03_07160) ade 1367810..1369543 (+) 1734 WP_202735947.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=529458 JKJ03_RS07140 WP_024085249.1 1364365..1364649(+) (abrB) [Bacillus velezensis strain GUMT319]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=529458 JKJ03_RS07140 WP_024085249.1 1364365..1364649(+) (abrB) [Bacillus velezensis strain GUMT319]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543