Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JKJ03_RS01765 Genome accession   NZ_CP068563
Coordinates   327284..327721 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMT319     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 322284..332721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ03_RS19315 - 322868..322996 (-) 129 Protein_301 hypothetical protein -
  JKJ03_RS01730 (JKJ03_01730) - 323141..324340 (+) 1200 WP_202735830.1 GTP-binding protein -
  JKJ03_RS01735 (JKJ03_01735) - 324405..325541 (+) 1137 WP_077721769.1 zinc-dependent alcohol dehydrogenase -
  JKJ03_RS01740 (JKJ03_01740) - 325556..325990 (+) 435 WP_021494203.1 RDD family protein -
  JKJ03_RS01745 (JKJ03_01745) - 326108..326383 (+) 276 WP_369719109.1 YckD family protein -
  JKJ03_RS01750 (JKJ03_01750) - 326487..326603 (+) 117 WP_194298544.1 family 1 glycosylhydrolase -
  JKJ03_RS01755 (JKJ03_01755) - 326602..326820 (+) 219 Protein_307 family 1 glycosylhydrolase -
  JKJ03_RS01760 (JKJ03_01760) nin/comJ 326863..327261 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  JKJ03_RS01765 (JKJ03_01765) nucA/comI 327284..327721 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JKJ03_RS01770 (JKJ03_01770) hxlB 328080..328637 (-) 558 WP_202735831.1 6-phospho-3-hexuloisomerase -
  JKJ03_RS01775 (JKJ03_01775) hxlA 328634..329269 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  JKJ03_RS01780 (JKJ03_01780) - 329501..329863 (+) 363 WP_016936795.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=529435 JKJ03_RS01765 WP_003156588.1 327284..327721(-) (nucA/comI) [Bacillus velezensis strain GUMT319]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=529435 JKJ03_RS01765 WP_003156588.1 327284..327721(-) (nucA/comI) [Bacillus velezensis strain GUMT319]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTCACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641