Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JMW47_RS18800 Genome accession   NZ_CP068552
Coordinates   4041024..4041893 (+) Length   289 a.a.
NCBI ID   WP_235689471.1    Uniprot ID   -
Organism   Clostridioides difficile strain 7009825     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4036024..4046893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW47_RS18400 (JMW47_18400) - 4036423..4036989 (+) 567 WP_003423380.1 beta-class carbonic anhydrase -
  JMW47_RS18405 (JMW47_18405) - 4037294..4037755 (+) 462 WP_003423381.1 MarR family winged helix-turn-helix transcriptional regulator -
  JMW47_RS18410 (JMW47_18410) - 4037823..4040069 (+) 2247 WP_003423382.1 ABC transporter ATP-binding protein -
  JMW47_RS18795 - 4040137..4040966 (+) 830 Protein_3583 ABC transporter ATP-binding protein -
  JMW47_RS18800 rcrQ 4041024..4041893 (+) 870 WP_235689471.1 ABC transporter ATP-binding protein Regulator
  JMW47_RS18420 (JMW47_18420) hflX 4042628..4043899 (+) 1272 WP_009905810.1 GTPase HflX -
  JMW47_RS18425 (JMW47_18425) - 4044132..4044629 (+) 498 WP_003423388.1 MarR family winged helix-turn-helix transcriptional regulator -
  JMW47_RS18430 (JMW47_18430) - 4044678..4045202 (+) 525 WP_003423389.1 flavodoxin domain-containing protein -
  JMW47_RS18435 (JMW47_18435) - 4045518..4046882 (+) 1365 WP_003423391.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32271.56 Da        Isoelectric Point: 4.4681

>NTDB_id=529280 JMW47_RS18800 WP_235689471.1 4041024..4041893(+) (rcrQ) [Clostridioides difficile strain 7009825]
MTQIAQVANLLQSTAAASERVFEFLEEEEEDQIVENAVSIDGLKGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIVG
PTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKSA
HVHRFIKTLPDGYNMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIAH
RLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 870 bp        

>NTDB_id=529280 JMW47_RS18800 WP_235689471.1 4041024..4041893(+) (rcrQ) [Clostridioides difficile strain 7009825]
ATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGAAGA
GGAAGAAGAAGACCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAAAAGGTAAAATTGATTTTGAAAATGTTAACT
TTGGATATAACCCAAACAAGACTATAATAAATGATTTTTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTTGGA
CCTACAGGAGCAGGTAAAACTACAATAGTTAAACTTTTAATGAGATTTTATGATGTTAATAGCGGTTCAATACTGATTGA
TGGACATAATATTAAAGATTTTAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTATTTA
GTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTTATAGAGGCTGCTAAATCTGCA
CATGTTCATAGATTTATTAAGACATTACCAGATGGATATAATATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCAAGG
TCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCTGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTTCTG
TTGATACTAGAACAGAAGTATTGATTCAAAAGGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCCCAC
AGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGAGATATAGTTGAACAAGGAAATCATGAGGA
ACTTCTAAAGAAAGGTGGATTTTATGCTAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(64-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

62.153

99.654

0.619
  comA/nlmT Streptococcus mutans UA159

40.072

95.848

0.384