Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   K7G42_RS04515 Genome accession   NZ_CP082783
Coordinates   817843..821481 (+) Length   1212 a.a.
NCBI ID   WP_004234310.1    Uniprot ID   A0ABN0ITK4
Organism   Streptococcus parauberis strain KRS02083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 812843..826481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G42_RS04505 (K7G42_04465) - 813458..814402 (-) 945 WP_003106525.1 neutral zinc metallopeptidase -
  K7G42_RS04510 (K7G42_04470) rexB 814590..817853 (+) 3264 WP_037619851.1 ATP-dependent nuclease subunit B Machinery gene
  K7G42_RS04515 (K7G42_04475) rexA 817843..821481 (+) 3639 WP_004234310.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  K7G42_RS04520 (K7G42_04480) - 821592..822722 (+) 1131 WP_003106529.1 aminotransferase -
  K7G42_RS04525 (K7G42_04485) - 822737..823549 (+) 813 WP_003104103.1 transporter substrate-binding domain-containing protein -
  K7G42_RS04530 (K7G42_04490) rpsU 823677..823853 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  K7G42_RS04535 (K7G42_04495) mscL 823962..824342 (-) 381 WP_003104850.1 large conductance mechanosensitive channel protein MscL -
  K7G42_RS04540 (K7G42_04500) dnaG 824469..826280 (+) 1812 WP_003106531.1 DNA primase -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 139704.51 Da        Isoelectric Point: 5.5730

>NTDB_id=529223 K7G42_RS04515 WP_004234310.1 817843..821481(+) (rexA) [Streptococcus parauberis strain KRS02083]
MNFKPFLTADQIKALQLHEASSNKKQKRTPEQIEAIYTSGQNVLVSASAGSGKTFVMVERIIDKLLRGVAIEEMFISTFT
VKAATELKERLEKKLVEAIKASDDYEMKSFLNYQLQSIHIADIGTMDSFTQKLISEYGYTLGIAPKYRIMQDKSEQDVIK
DIIYKDLFEIYMASDETGDFLRLVKNFSGNRKDSNGFKEIVNKVYTFSQSTENPLLWLDEVFLKGAQDYQGYADLPDYII
TDFLKIMSETAKQLRDLTEMEGYPKEKKDGKPTAKYTGHLKIIDYLEQNANEFNYIEDKDKISHLANEVSNLLPAGDSIT
VNKIAYQVYKQINASLRNLRHLDTIIQYQAESIPLLILLKNFVVDFSNAYLDRKKIENAFEFSDIAHFAIALLETYPEIR
QLYQDKYHEVMVDEYQDNNHMQERLLDLLSSGHNRFMVGDIKQSIYRFRQADPQIFNSKFKAYQEDPNQGKLILLKENFR
SQSEVLDVTNAIFTHLMDEEIGDILYDDNHRLIPGSAKQRELKTSNQAQVWIYDTDETSNPEPDSESDNDNLSPGQVKIV
AKEIIRLHQEEAVPFSEITLLVSSRTRNDSIFQTFNQYGIPLVADGGQENYLKSVEVMVMLETLRSINNPYNDYALVALM
RSPMFNFDEDQLARIALQTSQTQKLDSYYEKLKLAKSGQGQQRQLITTELAEKIGKFLSYLSQWRTYSQKQSLYSLIWKI
YNDRFYFDFVGTLPKAEQAQANLYALALRAQQFEKTGFKGLTRFIGMIDKILNSQNDLADVDVAKPKDAVSIMTIHKSKG
LEFQYVFILNCDKKFALKDIHSPMILSRHRGAGIKFLADLKDKLQANQLASLKVYLETIPYQMNRQELIFATLSEQMRLF
YVAMTRAEKKLYLIGKGIQKKLVDKFDGQKEGNHLPKALRESMQSFQEWILAIQAAFPLKDLHFNLAYIDDSQLTDQEIG
YLENKHSLDPDNLQNNRQTDEIARAIDMLDKVQELNQTYHAAITLPTVRTPSQIKKFYEPIMPSEGIDIISKTPFLPAEI
VLPDFSKEKTVLASDIGSAMHELMQRIPISDSLSLDDVEEAKRLIDASEEVKAALNLNMVFDFFEHTELGQMLQRNKERL
YREAPFAMLKMDNASHEKFVVRGIIDGFLRFDDRIILFDYKTDKYKNPLDIGHRYQDQMELYAEALQQAYGIHKIEKHLV
LLGGKKVEIITL

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=529223 K7G42_RS04515 WP_004234310.1 817843..821481(+) (rexA) [Streptococcus parauberis strain KRS02083]
ATGAACTTTAAGCCATTTTTAACTGCTGATCAAATCAAAGCTTTGCAATTACATGAAGCAAGTTCTAATAAAAAGCAAAA
ACGGACACCTGAGCAAATTGAAGCCATTTATACAAGTGGACAAAATGTTCTTGTATCAGCTTCAGCTGGTTCAGGTAAAA
CCTTTGTTATGGTTGAACGAATCATAGATAAGCTTCTCCGTGGAGTTGCAATCGAGGAAATGTTTATCTCTACATTTACT
GTTAAAGCAGCTACGGAATTAAAAGAACGTCTTGAAAAGAAATTAGTTGAGGCAATTAAAGCTAGTGATGATTATGAGAT
GAAATCTTTTCTCAATTACCAACTCCAGTCTATACACATAGCTGACATAGGAACAATGGATTCCTTCACCCAAAAGTTGA
TTTCAGAATATGGTTATACCTTAGGAATTGCGCCCAAATATCGCATTATGCAAGACAAGTCTGAGCAAGATGTTATAAAA
GATATTATTTATAAGGACCTATTTGAAATTTACATGGCATCAGATGAGACTGGTGACTTCCTCAGACTAGTCAAAAACTT
TTCTGGAAATCGCAAGGATTCAAATGGTTTTAAGGAAATTGTCAATAAGGTCTACACCTTCAGTCAATCAACGGAAAATC
CCTTATTATGGCTAGATGAGGTTTTCTTAAAAGGAGCACAAGACTACCAAGGCTATGCTGATTTACCGGATTATATTATC
ACTGATTTCCTCAAAATCATGTCTGAAACAGCAAAGCAATTACGTGATTTAACTGAGATGGAAGGTTATCCAAAAGAGAA
AAAAGATGGTAAACCAACGGCTAAGTATACAGGACACTTAAAAATAATTGATTACTTAGAGCAGAACGCTAATGAGTTTA
ATTATATTGAAGATAAAGATAAGATAAGTCATTTAGCTAACGAAGTTTCAAACTTATTACCAGCAGGAGATTCTATTACA
GTTAACAAAATCGCCTATCAAGTCTATAAGCAAATTAATGCTAGCTTAAGAAACTTACGTCATCTTGATACCATTATTCA
GTATCAAGCAGAAAGTATCCCACTTTTAATCCTTCTGAAAAATTTTGTTGTTGATTTTTCAAATGCTTATCTGGATCGCA
AAAAAATTGAGAATGCTTTTGAATTTTCAGACATTGCTCATTTTGCAATTGCTCTTCTAGAAACATACCCAGAGATTAGA
CAGCTGTATCAAGATAAGTACCATGAAGTAATGGTTGATGAGTATCAGGATAACAATCACATGCAAGAACGACTACTTGA
CTTATTATCAAGTGGGCATAATCGTTTTATGGTAGGTGATATAAAACAATCGATTTATCGCTTCCGTCAAGCTGACCCAC
AAATCTTTAATAGTAAATTTAAAGCGTATCAGGAAGATCCAAATCAAGGGAAATTAATCCTACTAAAAGAAAATTTCCGG
AGTCAATCGGAAGTTCTTGATGTAACAAATGCTATATTTACTCATTTGATGGATGAAGAAATTGGTGATATCCTTTATGA
TGACAATCATCGTCTCATCCCAGGAAGTGCAAAACAAAGAGAACTGAAAACAAGTAATCAAGCTCAAGTCTGGATTTATG
ACACAGATGAGACAAGTAATCCTGAACCTGATTCAGAAAGTGACAATGACAACCTTAGCCCAGGTCAAGTCAAGATTGTA
GCAAAAGAAATAATCCGTCTTCATCAAGAAGAAGCTGTACCCTTTTCAGAAATTACCTTATTGGTCTCATCCAGAACGCG
TAATGACAGTATTTTTCAAACCTTTAATCAGTACGGCATACCACTAGTGGCAGATGGCGGTCAAGAAAACTATCTGAAGT
CAGTAGAAGTCATGGTTATGCTAGAAACCCTTCGATCCATCAACAATCCTTATAATGACTATGCTTTGGTTGCCTTAATG
CGATCGCCAATGTTTAACTTTGACGAAGATCAATTGGCAAGAATTGCTTTGCAGACAAGCCAAACTCAAAAGTTAGATAG
TTATTATGAAAAATTAAAACTAGCAAAAAGTGGACAGGGTCAGCAGCGACAATTAATTACTACTGAATTAGCCGAAAAAA
TTGGCAAATTTCTAAGTTATCTTAGTCAATGGCGAACCTATTCTCAGAAGCAATCATTGTATTCCCTAATTTGGAAAATT
TATAATGATCGATTCTATTTTGATTTTGTTGGAACATTACCGAAAGCTGAACAGGCTCAGGCCAACTTGTACGCACTTGC
CTTACGGGCACAGCAATTCGAGAAGACAGGGTTTAAAGGTTTAACACGGTTTATCGGAATGATTGATAAAATTCTAAATA
GTCAAAATGACTTGGCTGATGTTGATGTTGCGAAACCAAAAGATGCGGTTAGTATCATGACTATTCATAAATCGAAAGGC
TTAGAGTTTCAGTATGTCTTTATCTTAAACTGTGATAAAAAATTTGCCTTGAAAGATATCCACTCACCGATGATTTTAAG
CCGCCACCGTGGGGCTGGAATTAAATTTTTAGCTGATTTAAAAGACAAATTACAAGCTAATCAACTGGCTAGTCTAAAAG
TTTATCTGGAAACAATTCCTTACCAAATGAATCGTCAGGAGTTAATCTTTGCTACCCTATCAGAACAAATGCGACTCTTC
TATGTGGCGATGACCAGAGCAGAGAAAAAATTGTATTTGATTGGTAAAGGAATTCAAAAGAAATTAGTAGATAAATTTGA
TGGTCAAAAAGAAGGAAACCACTTACCGAAAGCTTTAAGAGAAAGTATGCAAAGCTTTCAAGAATGGATTCTCGCTATCC
AGGCTGCCTTTCCACTAAAAGACTTGCATTTTAATCTAGCATATATTGATGATAGTCAACTTACTGATCAAGAAATTGGC
TATTTAGAAAACAAACATAGTTTAGATCCTGATAATCTCCAAAATAACCGGCAGACTGATGAGATTGCGCGTGCCATTGA
TATGTTGGATAAAGTCCAAGAGCTAAATCAAACATACCACGCGGCGATTACTTTACCAACAGTTCGTACCCCAAGTCAAA
TTAAGAAGTTTTATGAACCAATTATGCCTTCTGAAGGGATTGACATTATCAGTAAAACACCATTTTTACCGGCTGAAATT
GTCTTGCCTGATTTTTCAAAAGAAAAAACAGTATTGGCTAGTGATATTGGTTCAGCAATGCATGAACTAATGCAGCGAAT
TCCCATCTCTGATTCTCTTAGCTTAGATGATGTTGAAGAAGCTAAAAGGTTAATTGATGCAAGTGAGGAAGTTAAAGCAG
CATTAAACCTCAATATGGTGTTTGATTTCTTTGAACATACTGAATTAGGTCAAATGCTTCAAAGAAATAAAGAACGTTTA
TATCGTGAAGCACCATTTGCCATGCTCAAAATGGATAATGCCAGCCACGAAAAATTTGTTGTTCGTGGGATCATTGATGG
TTTCTTACGTTTTGATGATAGAATTATCCTTTTTGATTATAAAACTGACAAGTACAAGAATCCTCTTGACATTGGCCATC
GTTACCAAGACCAAATGGAACTATATGCAGAAGCTCTCCAACAAGCCTATGGCATTCATAAGATTGAAAAACATTTAGTC
CTACTTGGTGGAAAAAAAGTTGAAATAATAACCTTATAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1050-1189)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-463)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-894)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

48.214

100

0.49