Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JJL45_RS01210 Genome accession   NZ_CP068547
Coordinates   277472..278830 (-) Length   452 a.a.
NCBI ID   WP_068601271.1    Uniprot ID   -
Organism   Tamlana sp. s12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 272472..283830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL45_RS01195 (JJL45_01195) - 272681..273307 (-) 627 WP_068601275.1 lipoprotein signal peptidase -
  JJL45_RS01200 (JJL45_01200) - 273539..273916 (-) 378 WP_068601753.1 TraR/DksA family transcriptional regulator -
  JJL45_RS01205 (JJL45_01205) ileS 273921..277325 (-) 3405 WP_068601273.1 isoleucine--tRNA ligase -
  JJL45_RS01210 (JJL45_01210) radA 277472..278830 (-) 1359 WP_068601271.1 DNA repair protein RadA Machinery gene
  JJL45_RS01215 (JJL45_01215) - 278863..280011 (-) 1149 WP_068601269.1 alpha/beta hydrolase -
  JJL45_RS01220 (JJL45_01220) - 280101..281069 (-) 969 WP_068601268.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  JJL45_RS01225 (JJL45_01225) panD 281074..281424 (-) 351 WP_068601266.1 aspartate 1-decarboxylase -
  JJL45_RS01230 (JJL45_01230) panC 281438..282289 (-) 852 WP_068601264.1 pantoate--beta-alanine ligase -
  JJL45_RS01235 (JJL45_01235) - 282477..283286 (+) 810 WP_067144945.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49627.09 Da        Isoelectric Point: 6.0947

>NTDB_id=529214 JJL45_RS01210 WP_068601271.1 277472..278830(-) (radA) [Tamlana sp. s12]
MAKVKTTFFCQNCGTQFAKWQGQCTACKEWNTIVEELVQKAEKSDWKTPTTASKRAAVPLLVSEIDTSKEPRLNTFDGEL
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQVSLGLPYKTLYVSGEESQKQIKMRAERVNPNNSNCYILTETKTQNIFKQI
EALEPDIVIIDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETATPVLLIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVFRILRAHKNRFGSTNELGIYEMQGSGLREVTNPSEILISKKDEELSGNAIAATLEGMRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGITVDDPAIDLAVVASILSSNEDVSIPKDYCFAAEVGLSGEI
RPVQRVEQRILEAEKLGFATIFVSKYNKISLQNTAIKIQLISKMEDLVDFLV

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=529214 JJL45_RS01210 WP_068601271.1 277472..278830(-) (radA) [Tamlana sp. s12]
ATGGCCAAGGTTAAAACCACATTTTTTTGTCAGAATTGCGGAACACAATTCGCAAAATGGCAAGGGCAATGTACTGCTTG
TAAAGAGTGGAATACCATTGTAGAAGAATTGGTGCAAAAGGCTGAAAAAAGCGATTGGAAAACACCAACAACAGCATCAA
AACGAGCGGCTGTGCCATTGTTAGTGAGTGAAATTGATACCTCGAAAGAGCCACGATTAAACACTTTTGATGGGGAATTA
AACCGCGTTTTGGGAGGTGGTATTGTGCCTGGATCTTTAACACTTTTAGGAGGAGAGCCGGGTATTGGAAAAAGTACCTT
GTTGCTTCAGGTTTCTTTAGGCTTGCCTTACAAAACGCTTTACGTTTCTGGAGAAGAAAGTCAGAAACAAATTAAAATGC
GTGCCGAACGTGTTAATCCCAATAACAGTAATTGTTACATTTTAACAGAAACAAAAACTCAAAATATCTTTAAGCAAATA
GAAGCTTTGGAGCCTGATATTGTGATCATAGATTCCATTCAAACCCTGCATAGCGACTATATTGAATCTTCCTCAGGGAG
CATTTCTCAGATAAAAGAATGTACTACCGAACTTATAAAATTTGCTAAAGAAACGGCGACTCCGGTGCTGCTTATTGGGC
ATATTACTAAAGATGGAAATATCGCTGGTCCAAAAATTTTGGAACATATGGTAGATACCGTTTTGCAATTTGAAGGCGAT
CGTAACCATGTATTCCGAATTTTACGAGCTCATAAAAACCGTTTTGGTTCTACGAACGAATTGGGGATTTATGAAATGCA
AGGTTCTGGACTTCGAGAGGTGACCAATCCTTCAGAAATATTAATATCAAAGAAAGACGAAGAGCTATCGGGTAATGCTA
TTGCAGCAACTTTAGAAGGTATGCGTCCTTTAATGATTGAGGTTCAGGCCTTGGTTAGTACTGCGGTTTATGGTACACCG
CAACGTTCGGCAACAGGGTTTAATGCCAAGCGTTTAAATATGCTTTTGGCTGTTTTAGAGAAACGTGCTGGCTTTCGTTT
GGGTGCAAAAGATGTTTTTCTAAACATTACTGGTGGTATCACTGTAGATGATCCGGCTATCGATTTGGCGGTTGTAGCTT
CTATTTTGTCATCCAATGAAGATGTGTCTATTCCCAAAGATTACTGTTTTGCTGCCGAGGTTGGTCTTTCAGGTGAAATA
CGACCCGTTCAGCGTGTGGAACAGCGTATTTTAGAAGCTGAAAAATTAGGTTTTGCTACCATTTTTGTTTCTAAATATAA
CAAGATTTCGCTTCAAAATACTGCAATTAAAATTCAGCTTATTTCCAAAATGGAAGATTTAGTGGATTTTCTAGTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-219)

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.93

95.133

0.485
  radA Streptococcus mitis SK321

49.21

98.009

0.482
  radA Streptococcus pneumoniae Rx1

50.117

94.469

0.473
  radA Streptococcus pneumoniae D39

50.117

94.469

0.473
  radA Streptococcus pneumoniae R6

50.117

94.469

0.473
  radA Streptococcus pneumoniae TIGR4

50.117

94.469

0.473
  radA Streptococcus mitis NCTC 12261

50.117

94.469

0.473